PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55001-55050 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | * | 96.3855 | 93.7500 | 99.1736 | 88.0788 | 120 | 8 | 120 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 68.7500 | 120 | 2 | 120 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | * | 89.2193 | 83.9161 | 95.2381 | 89.8795 | 120 | 23 | 120 | 6 | 3 | 50.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7620 | 98.3607 | 99.1667 | 63.0769 | 120 | 2 | 119 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 94.6831 | 120 | 1 | 120 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 58.6806 | 120 | 2 | 119 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 59.1065 | 120 | 2 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 90.4610 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 70.2970 | 120 | 2 | 120 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 59.3857 | 120 | 2 | 119 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | segdup | hetalt | 96.0000 | 92.3077 | 100.0000 | 94.6374 | 120 | 10 | 122 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.8617 | 94.4882 | 95.2381 | 52.2727 | 120 | 7 | 120 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 86.3309 | 98.3607 | 76.9231 | 97.0115 | 120 | 2 | 120 | 36 | 1 | 2.7778 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 92.6641 | 95.2381 | 90.2256 | 92.2449 | 120 | 6 | 120 | 13 | 1 | 7.6923 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9540 | 90.2256 | 93.7500 | 86.9919 | 120 | 13 | 105 | 7 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.2166 | 24.5902 | 85.7143 | 80.9783 | 120 | 368 | 120 | 20 | 20 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | het | 74.0028 | 99.1736 | 59.0226 | 95.4854 | 120 | 1 | 157 | 109 | 17 | 15.5963 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 41.9959 | 48.5830 | 36.9818 | 58.8396 | 120 | 127 | 223 | 380 | 217 | 57.1053 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1660 | 99.1736 | 95.2381 | 95.1087 | 120 | 1 | 120 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.7742 | 98.3607 | 95.2381 | 84.7826 | 120 | 2 | 120 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 73.3945 | 88.8889 | 62.5000 | 87.0095 | 120 | 15 | 120 | 72 | 69 | 95.8333 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | het | 6.7114 | 57.6923 | 3.5629 | 37.9971 | 120 | 88 | 150 | 4060 | 4050 | 99.7537 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 64.1566 | 120 | 2 | 119 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.1558 | 24.5902 | 85.1064 | 80.8424 | 120 | 368 | 120 | 21 | 21 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 91.9540 | 99.1736 | 85.7143 | 97.3953 | 120 | 1 | 120 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 62.9283 | 120 | 2 | 119 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 86.3208 | 120 | 6 | 116 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 93.0726 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 87.3846 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 96.2930 | 120 | 1 | 120 | 5 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2135 | 67.4157 | 93.1298 | 72.7651 | 120 | 58 | 122 | 9 | 3 | 33.3333 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7742 | 95.2381 | 98.3607 | 91.6496 | 120 | 6 | 120 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.8057 | 94.4882 | 76.9231 | 49.6774 | 120 | 7 | 120 | 36 | 30 | 83.3333 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 63.0435 | 120 | 2 | 119 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 47.7208 | 120 | 2 | 367 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5866 | 96.7742 | 98.4127 | 90.1946 | 120 | 4 | 124 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.2817 | 91.6667 | 99.1935 | 77.0370 | 121 | 11 | 123 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0317 | 96.0317 | 96.0317 | 92.9688 | 121 | 5 | 121 | 5 | 1 | 20.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 49.9618 | 35.4839 | 84.3972 | 87.4219 | 121 | 220 | 119 | 22 | 19 | 86.3636 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 91.8936 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.5312 | 99.1803 | 90.2985 | 86.3821 | 121 | 1 | 121 | 13 | 11 | 84.6154 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5885 | 99.1803 | 100.0000 | 62.8483 | 121 | 1 | 120 | 0 | 0 | ||