PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54951-55000 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.3590 | 119 | 0 | 118 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 93.6988 | 94.4444 | 92.9648 | 84.0673 | 119 | 7 | 185 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | * | 93.4963 | 92.9688 | 94.0299 | 88.4383 | 119 | 9 | 126 | 8 | 4 | 50.0000 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.9513 | 95.9677 | 95.9350 | 99.9185 | 119 | 5 | 118 | 5 | 0 | 0.0000 | |
| ckim-gatk | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 46.1817 | 33.6158 | 73.7500 | 67.0103 | 119 | 235 | 118 | 42 | 40 | 95.2381 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4506 | 90.1515 | 99.1803 | 77.1107 | 119 | 13 | 121 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.6250 | 119 | 0 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.3674 | 89.4737 | 95.4545 | 87.9781 | 119 | 14 | 105 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.2139 | 119 | 0 | 119 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.0080 | 57.7670 | 99.1736 | 59.2593 | 119 | 87 | 120 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1032 | 98.3471 | 95.8904 | 94.6986 | 119 | 2 | 140 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | het | 79.3333 | 98.3471 | 66.4804 | 96.1331 | 119 | 2 | 119 | 60 | 4 | 6.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.3333 | 66.8539 | 97.5410 | 81.8452 | 119 | 59 | 119 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 46.1240 | 34.8974 | 68.0000 | 71.9101 | 119 | 222 | 17 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.6619 | 66.8539 | 87.1429 | 65.7702 | 119 | 59 | 122 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.4363 | 84.5070 | 97.2603 | 31.7757 | 120 | 22 | 142 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 51.2934 | 59.7015 | 44.9612 | 67.1338 | 120 | 81 | 116 | 142 | 139 | 97.8873 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1098 | 98.3607 | 95.8904 | 94.8006 | 120 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 37.7753 | 27.5229 | 60.2000 | 50.3476 | 120 | 316 | 301 | 199 | 199 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 79.0807 | 98.3607 | 66.1202 | 63.2530 | 120 | 2 | 121 | 62 | 56 | 90.3226 | |
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | * | 56.4706 | 39.3443 | 100.0000 | 98.8721 | 120 | 185 | 120 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | het | 79.4702 | 98.3607 | 66.6667 | 96.2081 | 120 | 2 | 120 | 60 | 4 | 6.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.4409 | 83.9161 | 49.7175 | 92.3969 | 120 | 23 | 88 | 89 | 17 | 19.1011 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 94.8617 | 98.3607 | 91.6031 | 96.0122 | 120 | 2 | 120 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 61.2378 | 120 | 2 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.2518 | 120 | 12 | 122 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_siren | homalt | 95.2381 | 92.3077 | 98.3607 | 84.5178 | 120 | 10 | 120 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 59.9327 | 120 | 2 | 119 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1660 | 96.7742 | 97.5610 | 90.7865 | 120 | 4 | 120 | 3 | 1 | 33.3333 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.1660 | 96.7742 | 97.5610 | 90.7029 | 120 | 4 | 120 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 94.5063 | 90.9091 | 98.4000 | 87.8758 | 120 | 12 | 123 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | segdup | hetalt | 95.6238 | 92.3077 | 99.1870 | 94.8211 | 120 | 10 | 122 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | segdup | * | 70.1754 | 62.8272 | 79.4702 | 93.2348 | 120 | 71 | 120 | 31 | 23 | 74.1935 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 64.2643 | 120 | 2 | 119 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 78.1655 | 88.8889 | 69.7509 | 87.5883 | 120 | 15 | 196 | 85 | 9 | 10.5882 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 83.6237 | 71.8563 | 100.0000 | 63.5714 | 120 | 47 | 51 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | segdup | hetalt | 96.0000 | 92.3077 | 100.0000 | 93.7787 | 120 | 10 | 122 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.8617 | 90.9091 | 99.1736 | 77.2556 | 120 | 12 | 120 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5915 | 71.0059 | 70.1818 | 64.6075 | 120 | 49 | 193 | 82 | 77 | 93.9024 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | * | 84.5587 | 83.9161 | 85.2113 | 88.7658 | 120 | 23 | 121 | 21 | 9 | 42.8571 | |