PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54901-54950 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 68.2081 | 51.7544 | 100.0000 | 92.8701 | 118 | 110 | 118 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.9187 | 79.7297 | 93.1494 | 34.9226 | 118 | 30 | 979 | 72 | 70 | 97.2222 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | * | 6.2397 | 5.0406 | 8.1875 | 34.9864 | 118 | 2223 | 117 | 1312 | 1251 | 95.3506 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.1193 | 94.4000 | 100.0000 | 27.2727 | 118 | 7 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l100_m2_e1 | hetalt | 94.4000 | 89.3939 | 100.0000 | 86.3481 | 118 | 14 | 120 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3333 | 96.7213 | 100.0000 | 68.6833 | 118 | 4 | 176 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.7659 | 88.7218 | 97.1963 | 86.4213 | 118 | 15 | 104 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7480 | 94.4444 | 99.1667 | 87.9154 | 119 | 7 | 119 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7552 | 97.5410 | 100.0000 | 57.1942 | 119 | 3 | 119 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.7944 | 80.4054 | 43.9024 | 68.0934 | 119 | 29 | 108 | 138 | 138 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 31.6092 | 119 | 0 | 119 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3437 | 97.5410 | 99.1597 | 59.6610 | 119 | 3 | 118 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5376 | 95.9677 | 99.1597 | 89.6970 | 119 | 5 | 118 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8140 | 119 | 0 | 119 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.1872 | 89.4737 | 97.2222 | 86.9407 | 119 | 14 | 105 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.8140 | 119 | 0 | 119 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 86.2319 | 98.3471 | 76.7742 | 96.9560 | 119 | 2 | 119 | 36 | 1 | 2.7778 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6025 | 89.4737 | 98.1308 | 87.4413 | 119 | 14 | 105 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.0000 | 119 | 0 | 119 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 94.3253 | 97.5410 | 91.3148 | 37.7628 | 119 | 3 | 757 | 72 | 4 | 5.5556 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.6041 | 74.3750 | 85.6240 | 66.7717 | 119 | 41 | 542 | 91 | 45 | 49.4505 | |
| qzeng-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.6098 | 119 | 0 | 122 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 67.2776 | 57.7670 | 80.5369 | 88.2492 | 119 | 87 | 120 | 29 | 23 | 79.3103 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.9004 | 97.5410 | 85.1064 | 84.7403 | 119 | 3 | 120 | 21 | 21 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | homalt | 99.5816 | 100.0000 | 99.1667 | 24.5283 | 119 | 0 | 119 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.6835 | 119 | 0 | 119 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 23.2024 | 14.2344 | 62.7119 | 73.6999 | 119 | 717 | 111 | 66 | 9 | 13.6364 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.0991 | 93.7008 | 73.0539 | 75.4412 | 119 | 8 | 122 | 45 | 44 | 97.7778 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 64.8045 | 74.3750 | 57.4163 | 84.4610 | 119 | 41 | 120 | 89 | 86 | 96.6292 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | hetalt | 94.8207 | 90.1515 | 100.0000 | 87.7654 | 119 | 13 | 121 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7552 | 97.5410 | 100.0000 | 72.2864 | 119 | 3 | 120 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 64.1521 | 78.2895 | 54.3396 | 87.4882 | 119 | 33 | 144 | 121 | 38 | 31.4050 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 29.2398 | 119 | 6 | 121 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 94.8207 | 98.3471 | 91.5385 | 95.9577 | 119 | 2 | 119 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.5410 | 95.2000 | 100.0000 | 30.0578 | 119 | 6 | 121 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||