PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54801-54850 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | het | 90.1961 | 94.2623 | 86.4662 | 97.5411 | 115 | 7 | 115 | 18 | 1 | 5.5556 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 70.0566 | 57.5000 | 89.6296 | 82.8897 | 115 | 85 | 121 | 14 | 5 | 35.7143 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 22.8209 | 19.0713 | 28.4058 | 74.7623 | 115 | 488 | 98 | 247 | 3 | 1.2146 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 32.5779 | 41.6667 | 26.7442 | 96.8657 | 115 | 161 | 115 | 315 | 15 | 4.7619 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 55.8708 | 55.0239 | 56.7442 | 69.7183 | 115 | 94 | 122 | 93 | 53 | 56.9892 | |
| ghariani-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 3.1089 | 0.0000 | 0.0000 | 115 | 3584 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | homalt | 81.8840 | 70.1220 | 98.3871 | 94.7657 | 115 | 49 | 122 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 35.1955 | 115 | 10 | 116 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l100_m1_e0 | het | 74.6753 | 91.2698 | 63.1868 | 86.5683 | 115 | 11 | 115 | 67 | 64 | 95.5224 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | homalt | 99.1379 | 100.0000 | 98.2906 | 94.5808 | 115 | 0 | 115 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | homalt | 99.1453 | 100.0000 | 98.3051 | 94.6942 | 116 | 0 | 116 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 40.0511 | 70.7317 | 27.9343 | 65.1961 | 116 | 48 | 119 | 307 | 306 | 99.6743 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 62.0854 | 55.5024 | 70.4403 | 70.2247 | 116 | 93 | 112 | 47 | 28 | 59.5745 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.5629 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 93.9271 | 90.6250 | 97.4790 | 92.6407 | 116 | 12 | 116 | 3 | 1 | 33.3333 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.3413 | 116 | 9 | 118 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2079 | 95.0820 | 91.4062 | 63.0058 | 116 | 6 | 117 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 77.9177 | 88.5496 | 69.5652 | 87.5000 | 116 | 15 | 192 | 84 | 9 | 10.7143 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 27.7778 | 116 | 9 | 117 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 84.6354 | 116 | 16 | 118 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 95.1515 | 116 | 6 | 116 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 91.4293 | 90.6250 | 92.2481 | 89.5037 | 116 | 12 | 119 | 10 | 5 | 50.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4733 | 93.5484 | 97.4790 | 90.8672 | 116 | 8 | 116 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.5181 | 116 | 9 | 117 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | hetalt | 93.5484 | 87.8788 | 100.0000 | 87.1739 | 116 | 16 | 118 | 0 | 0 | ||
| jlack-gatk | INDEL | * | segdup | hetalt | 94.3089 | 89.2308 | 100.0000 | 94.9936 | 116 | 14 | 117 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | * | 94.7418 | 92.0635 | 97.5806 | 88.6343 | 116 | 10 | 121 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 38.0952 | 23.6253 | 98.3051 | 64.2424 | 116 | 375 | 116 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.5515 | 69.4611 | 82.8125 | 75.1938 | 116 | 51 | 53 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.4366 | 54.9763 | 90.6250 | 82.2960 | 116 | 95 | 116 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 78.6395 | 95.0820 | 67.0455 | 69.1769 | 116 | 6 | 118 | 58 | 55 | 94.8276 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 71.8285 | 56.3107 | 99.1525 | 56.4576 | 116 | 90 | 117 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.4790 | 95.8678 | 99.1453 | 95.3828 | 116 | 5 | 116 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0711 | 95.0820 | 99.1453 | 67.2269 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.0711 | 95.0820 | 99.1453 | 62.8571 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 92.4953 | 90.6250 | 94.4444 | 89.0720 | 116 | 12 | 119 | 7 | 5 | 71.4286 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 96.6942 | 96.6942 | 96.6942 | 95.4167 | 117 | 4 | 117 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.4968 | 94.3548 | 96.6667 | 99.9204 | 117 | 7 | 116 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 26.0870 | 117 | 8 | 119 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.6942 | 93.6000 | 100.0000 | 29.3413 | 117 | 8 | 118 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l100_m2_e1 | hetalt | 93.9759 | 88.6364 | 100.0000 | 88.0522 | 117 | 15 | 119 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2241 | 56.7961 | 99.1597 | 58.2456 | 117 | 89 | 118 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.2758 | 92.1260 | 90.4412 | 74.2424 | 117 | 10 | 123 | 13 | 5 | 38.4615 | |
| qzeng-custom | INDEL | D6_15 | map_siren | homalt | 85.4475 | 90.0000 | 81.3333 | 76.9231 | 117 | 13 | 122 | 28 | 4 | 14.2857 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | * | 52.1158 | 38.3607 | 81.2500 | 92.0966 | 117 | 188 | 117 | 27 | 20 | 74.0741 | |
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |