PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54751-54800 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 90.1457 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 85.5721 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | homalt | 97.4359 | 95.7983 | 99.1304 | 27.2152 | 114 | 5 | 114 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6667 | 100.0000 | 97.3684 | 84.9604 | 114 | 0 | 111 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 88.8781 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.9945 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | homalt | 97.0213 | 95.7983 | 98.2759 | 29.2683 | 114 | 5 | 114 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.2117 | 93.4426 | 75.0000 | 70.8955 | 114 | 8 | 117 | 39 | 37 | 94.8718 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.8920 | 54.0284 | 69.7531 | 54.6218 | 114 | 97 | 113 | 49 | 49 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5997 | 84.4444 | 91.0000 | 79.0356 | 114 | 21 | 91 | 9 | 8 | 88.8889 | |
| ckim-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.6829 | 86.3636 | 100.0000 | 87.5536 | 114 | 18 | 116 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 95.7196 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.9712 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | het | 69.7358 | 54.2857 | 97.4790 | 97.5555 | 114 | 96 | 116 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e1 | het | 69.5232 | 54.0284 | 97.4790 | 97.6119 | 114 | 97 | 116 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | het | 58.1040 | 54.2857 | 62.5000 | 97.7123 | 114 | 96 | 115 | 69 | 33 | 47.8261 | |
| ciseli-custom | INDEL | * | map_l250_m2_e1 | het | 57.5214 | 54.0284 | 61.4973 | 97.7292 | 114 | 97 | 115 | 72 | 33 | 45.8333 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 67.3274 | 61.9565 | 73.7179 | 97.3052 | 114 | 70 | 115 | 41 | 14 | 34.1463 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 66.7396 | 61.6216 | 72.7848 | 97.3275 | 114 | 71 | 115 | 43 | 14 | 32.5581 | |
| ciseli-custom | INDEL | D1_5 | map_l125_m0_e0 | homalt | 78.7671 | 77.7027 | 79.8611 | 87.8069 | 115 | 33 | 115 | 29 | 24 | 82.7586 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.3846 | 71.4286 | 23.5174 | 34.4504 | 115 | 46 | 115 | 374 | 359 | 95.9893 | |
| ciseli-custom | SNP | ti | HG002complexvar | hetalt | 68.4524 | 55.5556 | 89.1473 | 41.3636 | 115 | 92 | 115 | 14 | 9 | 64.2857 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.2348 | 75.6579 | 15.8687 | 80.7530 | 115 | 37 | 116 | 615 | 18 | 2.9268 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 64.2458 | 0.0000 | 0.0000 | 115 | 64 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 92.0000 | 0.0000 | 0.0000 | 115 | 10 | 0 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6387 | 94.2623 | 99.1379 | 94.0604 | 115 | 7 | 115 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.6502 | 90.5512 | 99.1379 | 77.1203 | 115 | 12 | 115 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 76.1616 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.1744 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 95.8333 | 95.0413 | 96.6387 | 95.1009 | 115 | 6 | 115 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 92.0843 | 91.2698 | 92.9134 | 89.3990 | 115 | 11 | 118 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.1423 | 94.2623 | 79.3103 | 80.9461 | 115 | 7 | 115 | 30 | 20 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 67.5878 | 77.1812 | 60.1156 | 69.6491 | 115 | 34 | 104 | 69 | 68 | 98.5507 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 52.0278 | 40.2098 | 73.6842 | 72.8571 | 115 | 171 | 14 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.8709 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 30.4333 | 23.1388 | 44.4444 | 77.7989 | 115 | 382 | 104 | 130 | 109 | 83.8462 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0515 | 92.7419 | 97.4790 | 91.0526 | 115 | 9 | 116 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.6062 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 94.2623 | 91.2698 | 97.4576 | 92.5174 | 115 | 11 | 115 | 3 | 1 | 33.3333 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.5368 | 18.6688 | 45.8678 | 43.7209 | 115 | 501 | 111 | 131 | 110 | 83.9695 | |
| ckim-isaac | INDEL | I1_5 | func_cds | homalt | 98.2906 | 96.6387 | 100.0000 | 22.2973 | 115 | 4 | 115 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | * | 78.7671 | 65.3409 | 99.1379 | 93.2676 | 115 | 61 | 115 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 93.1750 | 91.2698 | 95.1613 | 88.9581 | 115 | 11 | 118 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.8626 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |