PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54451-54500 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 59.8171 | 57.4468 | 62.3913 | 40.7216 | 108 | 80 | 287 | 173 | 145 | 83.8150 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7368 | 92.3077 | 97.2973 | 92.3183 | 108 | 9 | 108 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.5246 | 98.1818 | 80.5970 | 89.8638 | 108 | 2 | 108 | 26 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l250_m0_e0 | homalt | 29.3080 | 17.1701 | 100.0000 | 98.5248 | 108 | 521 | 108 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 15.2225 | 9.4654 | 38.8554 | 56.6013 | 108 | 1033 | 129 | 203 | 109 | 53.6946 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 75.1152 | 108 | 4 | 108 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.2243 | 108 | 4 | 108 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4286 | 94.7368 | 98.1818 | 87.5425 | 108 | 6 | 108 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.7376 | 96.4286 | 99.0826 | 75.1708 | 108 | 4 | 108 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5752 | 95.5752 | 95.5752 | 96.0900 | 108 | 5 | 108 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.1034 | 87.0968 | 100.0000 | 87.1915 | 108 | 16 | 109 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7039 | 86.4000 | 100.0000 | 88.0952 | 108 | 17 | 110 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.3199 | 80.0000 | 91.3978 | 73.4286 | 108 | 27 | 85 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 93.9130 | 94.7368 | 93.1034 | 97.6346 | 108 | 6 | 108 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0000 | 93.1034 | 99.0826 | 87.7390 | 108 | 8 | 108 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0000 | 93.1034 | 99.0826 | 87.9956 | 108 | 8 | 108 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 92.7075 | 87.0968 | 99.0909 | 87.3418 | 108 | 16 | 109 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 94.6180 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.1818 | 96.4286 | 100.0000 | 74.6479 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_siren | hetalt | 98.1818 | 96.4286 | 100.0000 | 86.7647 | 108 | 4 | 108 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 84.0467 | 75.5245 | 94.7368 | 93.3255 | 108 | 35 | 108 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.0233 | 85.0394 | 27.9070 | 48.4000 | 108 | 19 | 108 | 279 | 270 | 96.7742 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 29.4976 | 75.5245 | 18.3280 | 86.4488 | 108 | 35 | 114 | 508 | 25 | 4.9213 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | het | 94.2847 | 97.2973 | 91.4530 | 95.8788 | 108 | 3 | 107 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0826 | 100.0000 | 98.1818 | 88.6831 | 108 | 0 | 108 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 81.0036 | 108 | 0 | 106 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 96.4286 | 0.0000 | 0.0000 | 108 | 4 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 93.7322 | 93.1624 | 94.3089 | 88.0234 | 109 | 8 | 116 | 7 | 3 | 42.8571 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.9655 | 96.4602 | 91.5966 | 97.4551 | 109 | 4 | 109 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 96.4602 | 95.6140 | 97.3214 | 89.5814 | 109 | 5 | 109 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 86.7947 | 109 | 15 | 110 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 93.1624 | 87.2000 | 100.0000 | 87.7076 | 109 | 16 | 111 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6425 | 97.3214 | 100.0000 | 74.2389 | 109 | 3 | 110 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 86.1499 | 109 | 3 | 109 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 11.1795 | 0.0000 | 0.0000 | 109 | 866 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l125_m0_e0 | homalt | 82.9069 | 73.6486 | 94.8276 | 89.1386 | 109 | 39 | 110 | 6 | 5 | 83.3333 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 94.3723 | 98.1982 | 90.8333 | 95.7865 | 109 | 2 | 109 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.4780 | 60.8939 | 99.2481 | 29.2553 | 109 | 70 | 132 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | hetalt | 98.6425 | 97.3214 | 100.0000 | 87.1765 | 109 | 3 | 109 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0352 | 93.9655 | 98.1982 | 88.9442 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m1_e0 | homalt | 22.5907 | 12.7336 | 100.0000 | 97.9792 | 109 | 747 | 109 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 21.9561 | 12.5000 | 90.1639 | 55.1471 | 109 | 763 | 110 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 63.9370 | 50.2304 | 87.9310 | 40.5128 | 109 | 108 | 102 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | het | 76.5318 | 83.2061 | 70.8487 | 83.4554 | 109 | 22 | 192 | 79 | 55 | 69.6203 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 67.2129 | 61.2360 | 74.4828 | 76.8000 | 109 | 69 | 108 | 37 | 37 | 100.0000 | |