PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54201-54250 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8140 | 91.9643 | 100.0000 | 71.8579 | 103 | 9 | 103 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 75.3120 | 84.4262 | 67.9739 | 56.5341 | 103 | 19 | 104 | 49 | 49 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | * | 94.5577 | 92.0354 | 97.2222 | 94.2614 | 104 | 9 | 105 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | hetalt | 91.2281 | 83.8710 | 100.0000 | 91.4516 | 104 | 20 | 106 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m0_e0 | homalt | 76.0880 | 63.4146 | 95.0920 | 93.4591 | 104 | 60 | 155 | 8 | 3 | 37.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | het | 76.0958 | 77.0370 | 75.1773 | 80.9202 | 104 | 31 | 106 | 35 | 25 | 71.4286 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.5431 | 70.2703 | 56.3470 | 39.8682 | 104 | 44 | 617 | 478 | 306 | 64.0167 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 82.4185 | 78.1955 | 87.1237 | 60.0801 | 104 | 29 | 521 | 77 | 54 | 70.1299 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002complexvar | hetalt | 58.9170 | 42.1053 | 98.0769 | 57.6087 | 104 | 143 | 153 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7574 | 27.8075 | 92.4731 | 71.5596 | 104 | 270 | 86 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 27.3019 | 16.0247 | 92.1569 | 56.7063 | 104 | 545 | 235 | 20 | 18 | 90.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 94.6345 | 91.2281 | 98.3051 | 82.6130 | 104 | 10 | 174 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | het | 85.2218 | 98.1132 | 75.3247 | 93.9718 | 104 | 2 | 174 | 57 | 14 | 24.5614 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | * | 91.6300 | 92.0354 | 91.2281 | 96.5990 | 104 | 9 | 104 | 10 | 3 | 30.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.4297 | 28.6501 | 89.7059 | 44.7154 | 104 | 259 | 61 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | het | 93.6937 | 98.1132 | 89.6552 | 95.7571 | 104 | 2 | 104 | 12 | 3 | 25.0000 | |
| cchapple-custom | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 83.8710 | 0.0000 | 0.0000 | 104 | 20 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l250_m1_e0 | het | 57.5615 | 54.7368 | 60.6936 | 97.5902 | 104 | 86 | 105 | 68 | 32 | 47.0588 | |
| anovak-vg | INDEL | I1_5 | map_l125_m0_e0 | homalt | 66.4001 | 91.2281 | 52.1951 | 85.4403 | 104 | 10 | 107 | 98 | 91 | 92.8571 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 31.9699 | 22.4138 | 55.7303 | 40.4682 | 104 | 360 | 496 | 394 | 328 | 83.2487 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 54.8356 | 78.1955 | 42.2222 | 77.3642 | 104 | 29 | 95 | 130 | 109 | 83.8462 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | homalt | 95.8525 | 95.4128 | 96.2963 | 96.6728 | 104 | 5 | 104 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 94.1176 | 91.2281 | 97.1963 | 82.9346 | 104 | 10 | 104 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.4611 | 78.1955 | 91.8182 | 83.7278 | 104 | 29 | 101 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m1_e0 | het | 89.2704 | 93.6937 | 85.2459 | 97.3920 | 104 | 7 | 104 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1132 | 96.2963 | 100.0000 | 81.5552 | 104 | 4 | 102 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.2941 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | het | 96.2963 | 93.6937 | 99.0476 | 93.5858 | 104 | 7 | 104 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2963 | 96.2963 | 96.2963 | 89.2430 | 104 | 4 | 104 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7442 | 96.2963 | 97.1963 | 88.8889 | 104 | 4 | 104 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 85.5769 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.6744 | 95.4545 | 100.0000 | 91.5527 | 105 | 5 | 105 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 88.6170 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 88.3948 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1219 | 97.2222 | 99.0385 | 80.7050 | 105 | 3 | 103 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | * | 58.6797 | 59.6591 | 57.7320 | 93.8118 | 105 | 71 | 112 | 82 | 51 | 62.1951 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 84.6774 | 86.7769 | 82.6772 | 96.9287 | 105 | 16 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 84.3373 | 86.0656 | 82.6772 | 96.9962 | 105 | 17 | 105 | 22 | 2 | 9.0909 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3303 | 93.7500 | 99.0566 | 76.1261 | 105 | 7 | 105 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.9300 | 58.6592 | 96.3768 | 29.2308 | 105 | 74 | 133 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 79.8224 | 95.4545 | 68.5897 | 91.7504 | 105 | 5 | 107 | 49 | 27 | 55.1020 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | het | 76.3802 | 83.3333 | 70.4981 | 82.9300 | 105 | 21 | 184 | 77 | 53 | 68.8312 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | * | 84.1683 | 92.9204 | 76.9231 | 95.9931 | 105 | 8 | 160 | 48 | 13 | 27.0833 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | * | 91.7031 | 92.1053 | 91.3043 | 96.6628 | 105 | 9 | 105 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.7742 | 93.7500 | 100.0000 | 71.6981 | 105 | 7 | 105 | 0 | 0 | ||