PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54051-54100 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.1268 | 90.0000 | 37.6866 | 90.4490 | 99 | 11 | 101 | 167 | 31 | 18.5629 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.2304 | 79.8387 | 86.9231 | 99.9093 | 99 | 25 | 113 | 17 | 5 | 29.4118 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 90.4324 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | het | 92.9577 | 93.3962 | 92.5234 | 96.0647 | 99 | 7 | 99 | 8 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e0 | * | 79.7632 | 78.5714 | 80.9917 | 92.2684 | 99 | 27 | 98 | 23 | 16 | 69.5652 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | * | 78.8076 | 77.3438 | 80.3279 | 92.3845 | 99 | 29 | 98 | 24 | 17 | 70.8333 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | homalt | 86.4629 | 76.1538 | 100.0000 | 75.5102 | 99 | 31 | 96 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 64.4951 | 47.5962 | 100.0000 | 91.0163 | 99 | 109 | 99 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | * | 86.6250 | 84.6154 | 88.7324 | 87.5548 | 99 | 18 | 126 | 16 | 16 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6522 | 96.1165 | 95.1923 | 89.3443 | 99 | 4 | 99 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 74.7423 | 99 | 9 | 98 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0588 | 96.1165 | 98.0198 | 86.6755 | 99 | 4 | 99 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | het | 76.2275 | 76.3359 | 76.1194 | 81.1001 | 100 | 31 | 102 | 32 | 23 | 71.8750 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7765 | 90.9091 | 92.6606 | 88.7745 | 100 | 10 | 101 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | hetalt | 83.8498 | 75.7576 | 93.8776 | 89.0990 | 100 | 32 | 92 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.0802 | 45.2489 | 35.9712 | 97.0872 | 100 | 121 | 100 | 178 | 16 | 8.9888 | |
| gduggal-snapvard | INDEL | * | map_l250_m2_e0 | homalt | 92.0987 | 86.9565 | 97.8873 | 93.0221 | 100 | 15 | 139 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 66.7314 | 81.9672 | 56.2718 | 32.0710 | 100 | 22 | 323 | 251 | 223 | 88.8446 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0874 | 97.0874 | 97.0874 | 86.4652 | 100 | 3 | 100 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 88.7931 | 100 | 3 | 100 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | het | 97.0874 | 94.3396 | 100.0000 | 92.4739 | 100 | 6 | 101 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | homalt | 92.1659 | 86.2069 | 99.0099 | 96.0531 | 100 | 16 | 100 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 96.1538 | 97.0874 | 95.2381 | 90.1961 | 100 | 3 | 100 | 5 | 1 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6938 | 97.0874 | 94.3396 | 90.0094 | 100 | 3 | 100 | 6 | 1 | 16.6667 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 57.9710 | 62.5000 | 54.0541 | 80.8884 | 100 | 60 | 100 | 85 | 84 | 98.8235 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.4977 | 88.4956 | 92.5926 | 96.4167 | 100 | 13 | 100 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 96.6184 | 97.0874 | 96.1538 | 91.7916 | 100 | 3 | 100 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 93.4579 | 94.3396 | 92.5926 | 97.3607 | 100 | 6 | 100 | 8 | 2 | 25.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.8967 | 91.7431 | 96.1538 | 94.0673 | 100 | 9 | 100 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 96.1538 | 97.0874 | 95.2381 | 87.4702 | 100 | 3 | 100 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | hetalt | 94.3396 | 89.2857 | 100.0000 | 88.0668 | 100 | 12 | 100 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.9077 | 80.6452 | 99.0566 | 99.9183 | 100 | 24 | 105 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 58.9695 | 42.1941 | 97.8873 | 36.0360 | 100 | 137 | 278 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.8931 | 46.2963 | 98.0392 | 83.4684 | 100 | 116 | 100 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1538 | 98.0392 | 94.3396 | 51.5982 | 100 | 2 | 100 | 6 | 5 | 83.3333 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 94.7867 | 97.0874 | 92.5926 | 91.6731 | 100 | 3 | 100 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.3396 | 98.0392 | 90.9091 | 62.3288 | 100 | 2 | 100 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.0874 | 94.3396 | 100.0000 | 86.5762 | 100 | 6 | 89 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | het | 95.6938 | 94.3396 | 97.0874 | 93.7764 | 100 | 6 | 100 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6938 | 97.0874 | 94.3396 | 91.8147 | 100 | 3 | 100 | 6 | 1 | 16.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.6938 | 94.3396 | 97.0874 | 96.3358 | 100 | 6 | 100 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 97.1200 | 95.2830 | 99.0291 | 93.8544 | 101 | 5 | 102 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | het | 96.1905 | 95.2830 | 97.1154 | 93.1848 | 101 | 5 | 101 | 3 | 1 | 33.3333 | |