PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53651-53700 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_siren | hetalt | 88.0000 | 78.5714 | 100.0000 | 86.0806 | 88 | 24 | 38 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.4582 | 83.0189 | 76.1905 | 81.2500 | 88 | 18 | 80 | 25 | 25 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7834 | 70.9677 | 93.7500 | 90.7514 | 88 | 36 | 90 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | I6_15 | map_siren | homalt | 96.7033 | 97.7778 | 95.6522 | 81.6367 | 88 | 2 | 88 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 9.0082 | 7.4513 | 11.3874 | 43.3234 | 88 | 1093 | 87 | 677 | 676 | 99.8523 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8764 | 98.8764 | 98.8764 | 69.7279 | 88 | 1 | 88 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.3441 | 88 | 1 | 88 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.6271 | 0.0000 | 0.0000 | 88 | 13944 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.8401 | 0.0000 | 0.0000 | 88 | 10387 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | * | hetalt | 0.0000 | 1.0291 | 0.0000 | 0.0000 | 88 | 8463 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 1.0308 | 0.0000 | 0.0000 | 88 | 8449 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 49.2669 | 36.3636 | 76.3636 | 65.9443 | 88 | 154 | 84 | 26 | 25 | 96.1538 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | * | 82.6291 | 90.7216 | 75.8621 | 95.5021 | 88 | 9 | 88 | 28 | 5 | 17.8571 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4350 | 98.8764 | 100.0000 | 76.2803 | 88 | 1 | 88 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 81.3278 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | het | 80.9816 | 79.2793 | 82.7586 | 97.8940 | 88 | 23 | 96 | 20 | 5 | 25.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.6154 | 16.4179 | 31.6279 | 50.5178 | 88 | 448 | 136 | 294 | 156 | 53.0612 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | * | 83.1665 | 75.2137 | 93.0000 | 84.8485 | 88 | 29 | 93 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 47.8883 | 35.6275 | 73.0159 | 53.4483 | 88 | 159 | 138 | 51 | 50 | 98.0392 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 28.8305 | 21.2560 | 44.7917 | 78.0069 | 88 | 326 | 86 | 106 | 102 | 96.2264 | |
| ghariani-varprowl | INDEL | I1_5 | * | hetalt | 0.0000 | 0.7861 | 0.0000 | 0.0000 | 88 | 11107 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 0.7873 | 0.0000 | 0.0000 | 88 | 11089 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | het | 97.7778 | 95.6522 | 100.0000 | 94.1216 | 88 | 4 | 88 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 83.4254 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | het | 97.2376 | 95.6522 | 98.8764 | 94.8044 | 88 | 4 | 88 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | * | 59.2100 | 61.5385 | 57.0513 | 92.6450 | 88 | 55 | 89 | 67 | 35 | 52.2388 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | het | 77.0066 | 95.6522 | 64.4444 | 95.1837 | 88 | 4 | 87 | 48 | 48 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | het | 77.5330 | 65.1852 | 95.6522 | 95.8633 | 88 | 47 | 88 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | * | 86.6896 | 77.1930 | 98.8506 | 81.4894 | 88 | 26 | 86 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | homalt | 96.1749 | 97.7778 | 94.6237 | 82.9044 | 88 | 2 | 88 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.3401 | 90.7216 | 88.0000 | 95.2584 | 88 | 9 | 88 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.8152 | 89 | 0 | 89 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.1911 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 87.2549 | 83.9623 | 90.8163 | 95.3356 | 89 | 17 | 89 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 88.1188 | 83.9623 | 92.7083 | 97.0525 | 89 | 17 | 89 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7391 | 96.7391 | 96.7391 | 70.4180 | 89 | 3 | 89 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 7.1086 | 0.0000 | 0.0000 | 89 | 1163 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | segdup | het | 96.2162 | 96.7391 | 95.6989 | 95.1461 | 89 | 3 | 89 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 75.6164 | 89 | 0 | 89 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 85.2201 | 89 | 1 | 89 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.6847 | 91.7526 | 83.9623 | 94.6973 | 89 | 8 | 89 | 17 | 4 | 23.5294 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | * | 78.4141 | 76.0684 | 80.9091 | 92.1090 | 89 | 28 | 89 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.2746 | 87.2549 | 66.1871 | 95.4411 | 89 | 13 | 92 | 47 | 3 | 6.3830 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.6740 | 88.1188 | 64.7887 | 95.5942 | 89 | 12 | 92 | 50 | 7 | 14.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 85.1946 | 78.0702 | 93.7500 | 92.5869 | 89 | 25 | 90 | 6 | 0 | 0.0000 | |