PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53351-53400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | * | 97.5904 | 95.2941 | 100.0000 | 89.8113 | 81 | 4 | 81 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 92.7320 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 57.0681 | 81 | 4 | 82 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 93.7690 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 92.8387 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.5316 | 65.3226 | 56.3953 | 87.8359 | 81 | 43 | 97 | 75 | 22 | 29.3333 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.5252 | 93.1034 | 91.9540 | 99.8905 | 81 | 6 | 80 | 7 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | * | 77.5120 | 63.2812 | 100.0000 | 95.9008 | 81 | 47 | 81 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 58.0645 | 40.9091 | 100.0000 | 94.7641 | 81 | 117 | 81 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | segdup | het | 78.4212 | 97.5904 | 65.5462 | 93.4795 | 81 | 2 | 78 | 41 | 40 | 97.5610 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | * | 60.9023 | 43.7838 | 100.0000 | 98.7465 | 81 | 104 | 81 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | * | 64.7096 | 56.6434 | 75.4545 | 82.7316 | 81 | 62 | 83 | 27 | 22 | 81.4815 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 52.8736 | 81 | 4 | 82 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 95.4267 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4706 | 96.4706 | 96.4706 | 94.3296 | 82 | 3 | 82 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.1830 | 82 | 1 | 82 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 86.7725 | 91.1111 | 82.8283 | 95.1111 | 82 | 8 | 82 | 17 | 4 | 23.5294 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.8691 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6190 | 96.4706 | 98.7952 | 93.1120 | 82 | 3 | 82 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.9394 | 82 | 1 | 82 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.9064 | 92.1348 | 100.0000 | 61.9512 | 82 | 7 | 78 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.0961 | 80.3922 | 88.1579 | 92.2449 | 82 | 20 | 67 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 90.1425 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 82.8283 | 0.0000 | 0.0000 | 82 | 17 | 0 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.8007 | 82 | 1 | 82 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 17.9562 | 55.4054 | 10.7143 | 41.9355 | 82 | 66 | 81 | 675 | 674 | 99.8519 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2036 | 96.4706 | 100.0000 | 88.0419 | 82 | 3 | 80 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.6554 | 86.3158 | 100.0000 | 88.5321 | 82 | 13 | 75 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | segdup | het | 95.9064 | 98.7952 | 93.1818 | 95.3733 | 82 | 1 | 82 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | * | 82.4121 | 91.1111 | 75.2294 | 95.6746 | 82 | 8 | 82 | 27 | 4 | 14.8148 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | segdup | het | 94.7977 | 98.7952 | 91.1111 | 94.6429 | 82 | 1 | 82 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 74.1595 | 60.7407 | 95.1883 | 35.4926 | 82 | 53 | 455 | 23 | 20 | 86.9565 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.2194 | 94.2529 | 94.1860 | 99.8927 | 82 | 5 | 81 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 63.4344 | 65.0794 | 61.8705 | 90.0572 | 82 | 44 | 86 | 53 | 13 | 24.5283 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | * | 78.8462 | 72.5664 | 86.3158 | 98.4655 | 82 | 31 | 82 | 13 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | * | 71.3819 | 70.0855 | 72.7273 | 85.2349 | 82 | 35 | 128 | 48 | 32 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8050 | 60.7407 | 21.5426 | 49.5302 | 82 | 53 | 81 | 295 | 292 | 98.9831 | |
| jlack-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.8743 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 93.1818 | 96.4706 | 90.1099 | 93.5825 | 82 | 3 | 82 | 9 | 1 | 11.1111 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 85.4167 | 81.1881 | 90.1099 | 93.4106 | 82 | 19 | 82 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.6077 | 91.1111 | 90.1099 | 93.5046 | 82 | 8 | 82 | 9 | 2 | 22.2222 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.2036 | 96.4706 | 100.0000 | 90.1442 | 82 | 3 | 82 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | * | 94.8307 | 95.3488 | 94.3182 | 91.7987 | 82 | 4 | 83 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | * | 95.3756 | 95.3488 | 95.4023 | 91.3087 | 82 | 4 | 83 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 92.6060 | 82 | 1 | 82 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||