PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53301-53350 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 76.3006 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | * | map_l250_m1_e0 | homalt | 71.5666 | 73.3945 | 69.8276 | 95.2322 | 80 | 29 | 81 | 35 | 32 | 91.4286 | |
| anovak-vg | INDEL | D1_5 | func_cds | het | 90.3955 | 94.1176 | 86.9565 | 42.5000 | 80 | 5 | 80 | 12 | 8 | 66.6667 | |
| astatham-gatk | INDEL | I6_15 | segdup | het | 97.5610 | 96.3855 | 98.7654 | 93.9052 | 80 | 3 | 80 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_siren | hetalt | 97.5610 | 95.2381 | 100.0000 | 90.8987 | 80 | 4 | 80 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.9091 | 84.2105 | 98.7654 | 91.5361 | 80 | 15 | 80 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 93.5396 | 91.9540 | 95.1807 | 99.8945 | 80 | 7 | 79 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.4317 | 91.9540 | 83.3333 | 94.2618 | 80 | 7 | 80 | 16 | 4 | 25.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.3707 | 94.1176 | 98.7342 | 89.6053 | 80 | 5 | 78 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 94.2808 | 94.1176 | 94.4444 | 90.3330 | 80 | 5 | 85 | 5 | 3 | 60.0000 | |
| ckim-dragen | SNP | tv | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.3855 | 91.9540 | 86.9565 | 95.3252 | 80 | 7 | 80 | 12 | 4 | 33.3333 | |
| ckim-dragen | SNP | * | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.8339 | 78.4314 | 35.4545 | 62.0035 | 80 | 22 | 78 | 142 | 137 | 96.4789 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 51.7241 | 45.4545 | 60.0000 | 94.3966 | 80 | 96 | 78 | 52 | 39 | 75.0000 | |
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.9747 | 0.0000 | 0.0000 | 81 | 2642 | 0 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.7161 | 93.1034 | 96.3855 | 99.8898 | 81 | 6 | 80 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 97.0060 | 98.7805 | 95.2941 | 94.2138 | 81 | 1 | 81 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 52.8736 | 81 | 4 | 82 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | segdup | het | 97.0060 | 97.5904 | 96.4286 | 95.3203 | 81 | 2 | 81 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | hetalt | 74.9736 | 61.3636 | 96.3415 | 86.1252 | 81 | 51 | 79 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_siren | hetalt | 0.0000 | 32.7935 | 0.0000 | 0.0000 | 81 | 166 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | segdup | het | 83.2383 | 97.5904 | 72.5664 | 93.7844 | 81 | 2 | 82 | 31 | 31 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 91.1281 | 81 | 1 | 81 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | segdup | het | 74.3119 | 88.0435 | 64.2857 | 94.1066 | 81 | 11 | 81 | 45 | 45 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.4864 | 39.5122 | 73.8739 | 83.1563 | 81 | 124 | 82 | 29 | 28 | 96.5517 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 23.0412 | 16.2978 | 39.3035 | 77.1850 | 81 | 416 | 79 | 122 | 119 | 97.5410 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.4864 | 39.5122 | 73.8739 | 83.1563 | 81 | 124 | 82 | 29 | 28 | 96.5517 | |
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 94.2640 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | segdup | het | 98.7805 | 97.5904 | 100.0000 | 92.5346 | 81 | 2 | 81 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 89.4595 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.9472 | 80.1980 | 94.9367 | 93.2536 | 81 | 20 | 75 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 92.0354 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 90.8989 | 81 | 1 | 81 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | segdup | het | 94.1860 | 97.5904 | 91.0112 | 95.1419 | 81 | 2 | 81 | 8 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0060 | 95.2941 | 98.7805 | 84.6154 | 81 | 4 | 81 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 87.6755 | 81 | 1 | 79 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 63.1068 | 81 | 27 | 76 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.5904 | 95.2941 | 100.0000 | 62.7193 | 81 | 4 | 85 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 90.0383 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 92.0821 | 81 | 1 | 81 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 92.4632 | 81 | 2 | 81 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.0110 | 90.0000 | 88.0435 | 93.0983 | 81 | 9 | 81 | 11 | 4 | 36.3636 | |