PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1052 1053 1054 1055 1056 1057 1058 1059 1060 ... 1720 1721 » 52751-52800 / 86044 show all
rpoplin-dv42	SNP	tv	tech_badpromoters	*	98.6111	98.6111	98.6111	48.9362	71	1	71	1	1	100.0000
rpoplin-dv42	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	92.1824	72	1	72	0	0
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	89.4410	87.8049	91.1392	77.4286	72	10	72	7	7	100.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	88.3436	82.7586	94.7368	83.5498	72	15	72	4	2	50.0000
ndellapenna-hhga	SNP	*	map_siren	hetalt	93.5065	88.8889	98.6301	75.8278	72	9	72	1	1	100.0000
ndellapenna-hhga	SNP	tv	map_siren	hetalt	93.5065	88.8889	98.6301	75.8278	72	9	72	1	1	100.0000
ltrigg-rtg2	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	87.8840	72	1	71	0	0
ltrigg-rtg2	SNP	tv	tech_badpromoters	*	98.6301	100.0000	97.2973	60.0000	72	0	72	2	0	0.0000
raldana-dualsentieon	INDEL	*	tech_badpromoters	*	97.2973	94.7368	100.0000	53.8462	72	4	72	0	0
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	49.3151	45.8599	53.3333	66.3342	72	85	72	63	61	96.8254
jpowers-varprowl	INDEL	D6_15	map_l100_m0_e0	*	72.3618	69.9029	75.0000	88.7588	72	31	72	24	21	87.5000
jpowers-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	66.3507	66.6667	66.0377	73.7624	72	36	70	36	36	100.0000
jpowers-varprowl	INDEL	I6_15	segdup	het	77.4194	86.7470	69.9029	92.0952	72	11	72	31	31	100.0000
jmaeng-gatk	INDEL	D6_15	map_l150_m1_e0	*	97.9592	98.6301	97.2973	94.2368	72	1	72	2	0	0.0000
jli-custom	INDEL	D1_5	map_siren	hetalt	91.7197	85.7143	98.6301	91.7045	72	12	72	1	0	0.0000
jli-custom	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	91.1001	72	1	72	0	0
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	30.9013	0.0000	0.0000	72	161	0	0	0
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	96.6443	96.0000	97.2973	64.7619	72	3	72	2	1	50.0000
astatham-gatk	INDEL	D6_15	map_l150_m1_e0	*	98.6301	98.6301	98.6301	92.9400	72	1	72	1	0	0.0000
asubramanian-gatk	INDEL	*	tech_badpromoters	*	97.2973	94.7368	100.0000	69.0987	72	4	72	0	0
bgallagher-sentieon	INDEL	D6_15	map_l150_m1_e0	*	98.6301	98.6301	98.6301	92.8571	72	1	72	1	0	0.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.3077	85.7143	100.0000	59.7765	72	12	72	0	0
asubramanian-gatk	INDEL	D16_PLUS	map_siren	het	90.9390	92.3077	89.6104	96.4236	72	6	69	8	1	12.5000
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6330	82.7586	97.7528	84.0215	72	15	87	2	2	100.0000
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
anovak-vg	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	58.1498	70.5882	49.4382	90.1657	72	30	88	90	30	33.3333
anovak-vg	SNP	*	tech_badpromoters	homalt	94.1001	90.0000	98.5915	33.0189	72	8	70	1	1	100.0000
gduggal-bwaplat	INDEL	I6_15	map_l100_m2_e0	*	76.5957	62.0690	100.0000	93.5426	72	44	72	0	0
gduggal-bwaplat	INDEL	I6_15	map_l100_m2_e1	*	76.5957	62.0690	100.0000	93.7008	72	44	72	0	0
eyeh-varpipe	INDEL	D1_5	func_cds	homalt	98.6301	97.2973	100.0000	24.2105	72	2	72	0	0
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e0	*	88.3436	87.8049	88.8889	89.8462	72	10	88	11	11	100.0000
eyeh-varpipe	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	21.7822	12.3499	92.2018	54.2977	72	511	201	17	17	100.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	67.8971	71.2871	64.8148	95.6696	72	29	70	38	8	21.0526
gduggal-bwafb	INDEL	D1_5	func_cds	homalt	98.6301	97.2973	100.0000	27.2727	72	2	72	0	0
gduggal-bwafb	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.2973	97.2973	97.2973	81.9512	72	2	72	2	2	100.0000
eyeh-varpipe	SNP	tv	tech_badpromoters	*	78.6517	100.0000	64.8148	71.8750	72	0	70	38	0	0.0000
gduggal-bwafb	SNP	tv	tech_badpromoters	*	97.2973	100.0000	94.7368	62.5616	72	0	72	4	0	0.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	96.6443	96.0000	97.2973	64.5933	72	3	72	2	1	50.0000
ckim-isaac	INDEL	D1_5	func_cds	homalt	98.6301	97.2973	100.0000	17.2414	72	2	72	0	0
egarrison-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	81.3034	71.2871	94.5946	91.5813	72	29	70	4	3	75.0000
egarrison-hhga	SNP	tv	tech_badpromoters	*	98.6301	100.0000	97.2973	49.3151	72	0	72	2	0	0.0000
ckim-isaac	SNP	*	tech_badpromoters	homalt	94.7368	90.0000	100.0000	24.2105	72	8	72	0	0
ckim-isaac	SNP	ti	tech_badpromoters	*	91.7197	84.7059	100.0000	34.5455	72	13	72	0	0
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	92.3077	85.7143	100.0000	59.7765	72	12	72	0	0
hfeng-pmm2	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	92.0792	72	1	72	0	0
jlack-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	91.1392	83.7209	100.0000	77.1429	72	14	80	0	0
hfeng-pmm1	INDEL	*	tech_badpromoters	*	97.2973	94.7368	100.0000	53.2468	72	4	72	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.6301	97.2973	100.0000	81.3953	72	2	72	0	0
hfeng-pmm3	INDEL	D6_15	map_l150_m1_e0	*	99.3103	98.6301	100.0000	90.9434	72	1	72	0	0
hfeng-pmm3	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	80.4469	70.5882	93.5065	93.3102	72	30	72	5	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge