PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52701-52750 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 58.6592 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.0237 | 77.1739 | 92.2078 | 54.4379 | 71 | 21 | 71 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 54.1935 | 71 | 13 | 71 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0528 | 78.8889 | 97.1014 | 85.5649 | 71 | 19 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.2603 | 94.6667 | 100.0000 | 64.9038 | 71 | 4 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 88.1956 | 71 | 2 | 70 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.4255 | 44.0994 | 95.9459 | 40.8000 | 71 | 90 | 71 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 97.9310 | 97.2603 | 98.6111 | 93.1689 | 71 | 2 | 71 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.6434 | 31.9820 | 37.7880 | 55.5328 | 71 | 151 | 82 | 135 | 123 | 91.1111 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 81.4433 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 64.9289 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5986 | 97.2603 | 95.9459 | 94.3164 | 71 | 2 | 71 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 53.8961 | 71 | 13 | 71 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0856 | 78.8889 | 97.1831 | 84.3612 | 71 | 19 | 69 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6129 | 85.5422 | 98.6111 | 44.6154 | 71 | 12 | 71 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 54.5455 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.6913 | 81.6092 | 85.8824 | 87.5549 | 71 | 16 | 73 | 12 | 6 | 50.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | * | 94.6667 | 93.4211 | 95.9459 | 50.0000 | 71 | 5 | 71 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 36.3200 | 81.6092 | 23.3577 | 88.6542 | 71 | 16 | 64 | 210 | 1 | 0.4762 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8960 | 70.2970 | 16.6292 | 88.2926 | 71 | 30 | 74 | 371 | 22 | 5.9299 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.5778 | 77.1739 | 98.5915 | 60.3352 | 71 | 21 | 70 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 80.6971 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 62.8141 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 53.8961 | 71 | 13 | 71 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.5631 | 57.2581 | 71.4286 | 99.8537 | 71 | 53 | 65 | 26 | 10 | 38.4615 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 79.4406 | 78.8889 | 80.0000 | 92.4306 | 71 | 19 | 72 | 18 | 9 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 64.0842 | 58.6777 | 70.5882 | 97.7293 | 71 | 50 | 72 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 63.2360 | 58.1967 | 69.2308 | 97.7322 | 71 | 51 | 72 | 32 | 6 | 18.7500 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 26.6490 | 16.9856 | 61.8182 | 56.0000 | 71 | 347 | 68 | 42 | 32 | 76.1905 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | het | 91.0256 | 92.2078 | 89.8734 | 77.4286 | 71 | 6 | 71 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m0_e0 | * | 73.1479 | 91.0256 | 61.1399 | 97.2779 | 71 | 7 | 118 | 75 | 15 | 20.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.1322 | 87.6543 | 70.4762 | 77.5161 | 71 | 10 | 74 | 31 | 30 | 96.7742 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | * | 80.2812 | 68.9320 | 96.1039 | 84.6307 | 71 | 32 | 74 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | het | 71.6829 | 85.5422 | 61.6883 | 91.3966 | 71 | 12 | 95 | 59 | 50 | 84.7458 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7542 | 70.2970 | 21.3514 | 93.1022 | 71 | 30 | 79 | 291 | 7 | 2.4055 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 81.4136 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 48.9209 | 71 | 1 | 71 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 45.6361 | 81.6092 | 31.6742 | 99.7077 | 71 | 16 | 70 | 151 | 4 | 2.6490 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 93.4211 | 97.2603 | 89.8734 | 93.5668 | 71 | 2 | 71 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 50.0000 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.5479 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 49.6454 | 71 | 1 | 71 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 90.0421 | 71 | 2 | 71 | 0 | 0 | ||
| jlack-gatk | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 52.8302 | 71 | 1 | 71 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.6011 | 71 | 3 | 71 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 89.8281 | 71 | 2 | 71 | 0 | 0 | ||