PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52601-52650 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | tech_badpromoters | * | 93.8212 | 95.8333 | 91.8919 | 51.6340 | 69 | 3 | 68 | 6 | 1 | 16.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | homalt | 81.7259 | 76.6667 | 87.5000 | 82.1029 | 69 | 21 | 70 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 47.5592 | 44.5161 | 51.0490 | 71.9424 | 69 | 86 | 219 | 210 | 175 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 54.6053 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| astatham-gatk | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 53.6424 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8333 | 93.2432 | 98.5714 | 82.3678 | 69 | 5 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1831 | 95.8333 | 98.5714 | 77.4194 | 69 | 3 | 69 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 69.6970 | 97.1831 | 54.3307 | 50.1961 | 69 | 2 | 69 | 58 | 58 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.2432 | 92.0000 | 94.5205 | 64.5631 | 69 | 6 | 69 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.8242 | 97.1831 | 62.1622 | 52.7660 | 69 | 2 | 69 | 42 | 42 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.1961 | 82.1429 | 100.0000 | 59.6491 | 69 | 15 | 69 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.7895 | 92.0000 | 89.6104 | 65.7778 | 69 | 6 | 69 | 8 | 6 | 75.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8723 | 97.1831 | 98.5714 | 91.2060 | 69 | 2 | 69 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1831 | 97.1831 | 97.1831 | 91.2562 | 69 | 2 | 69 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 90.5333 | 69 | 0 | 71 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 95.4357 | 97.1831 | 93.7500 | 89.2905 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 95.4357 | 97.1831 | 93.7500 | 89.5288 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | * | 83.2113 | 80.2326 | 86.4198 | 84.0551 | 69 | 17 | 70 | 11 | 7 | 63.6364 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.2806 | 41.3174 | 88.2353 | 79.4355 | 69 | 98 | 135 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.4030 | 55.6452 | 85.4610 | 99.7606 | 69 | 55 | 482 | 82 | 74 | 90.2439 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.4098 | 97.1831 | 61.6071 | 52.7426 | 69 | 2 | 69 | 43 | 43 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 76.6892 | 69 | 3 | 69 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.7018 | 67.6471 | 100.0000 | 53.9474 | 69 | 33 | 70 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.8539 | 63.8889 | 93.3333 | 73.2143 | 69 | 39 | 70 | 5 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.6997 | 77.5281 | 93.3333 | 61.1399 | 69 | 20 | 70 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.4098 | 97.1831 | 61.6071 | 52.3404 | 69 | 2 | 69 | 43 | 43 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_siren | hetalt | 97.8723 | 95.8333 | 100.0000 | 78.5047 | 69 | 3 | 69 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.8961 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | het | 65.4206 | 48.9510 | 98.5915 | 87.8425 | 70 | 73 | 70 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.2895 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 85.9341 | 80.4598 | 92.2078 | 71.1610 | 70 | 17 | 71 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.5193 | 68.6275 | 94.5205 | 91.5704 | 70 | 32 | 69 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 84.3557 | 82.3529 | 86.4583 | 93.8184 | 70 | 15 | 83 | 13 | 6 | 46.1538 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | het | 48.4429 | 33.1754 | 89.7436 | 93.5537 | 70 | 141 | 70 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.0008 | 80.4598 | 97.1014 | 83.0882 | 70 | 17 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.5517 | 93.3333 | 100.0000 | 56.3636 | 70 | 5 | 72 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 44.2166 | 52.6316 | 38.1215 | 75.7697 | 70 | 63 | 69 | 112 | 110 | 98.2143 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 40.4624 | 33.1754 | 51.8519 | 75.6757 | 70 | 141 | 70 | 65 | 58 | 89.2308 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jli-custom | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 52.9801 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9091 | 84.3373 | 98.5915 | 47.0149 | 70 | 13 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.4037 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.2381 | 93.3333 | 97.2222 | 64.3564 | 70 | 5 | 70 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.8843 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |