PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52451-52500 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | func_cds | homalt | 94.3662 | 90.5405 | 98.5294 | 29.8969 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 74.1313 | 67 | 6 | 67 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8530 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.2298 | 72.8261 | 97.1014 | 59.1716 | 67 | 25 | 67 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.9646 | 67 | 0 | 66 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 76.8966 | 67 | 5 | 67 | 0 | 0 | ||
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0136 | 77.0115 | 85.4545 | 99.8819 | 67 | 20 | 94 | 16 | 4 | 25.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 75.0929 | 67 | 6 | 67 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.4009 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.2424 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.2188 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 75.0929 | 67 | 6 | 67 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | het | 94.3662 | 94.3662 | 94.3662 | 94.5636 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | het | 94.3662 | 94.3662 | 94.3662 | 94.6896 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 89.5385 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.2767 | 81.7073 | 87.0130 | 73.5395 | 67 | 15 | 67 | 10 | 10 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 89.5149 | 67 | 4 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1014 | 94.3662 | 100.0000 | 89.7239 | 67 | 4 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8889 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.5256 | 67 | 5 | 67 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 86.4432 | 77.0115 | 98.5075 | 99.9051 | 67 | 20 | 66 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.7660 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 86.8821 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.1925 | 67 | 5 | 67 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 89.3333 | 94.3662 | 84.8101 | 93.8807 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 91.9048 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 92.0653 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 69.0909 | 68 | 0 | 68 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 60.9890 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 90.5556 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 90.7609 | 68 | 3 | 68 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.8073 | 68 | 0 | 68 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 69.2982 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.3721 | 68 | 0 | 68 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | * | 81.0503 | 79.0698 | 83.1325 | 85.7143 | 68 | 18 | 69 | 14 | 10 | 71.4286 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | homalt | 73.1839 | 59.1304 | 96.0000 | 96.3262 | 68 | 47 | 96 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.1351 | 100.0000 | 90.7216 | 63.3962 | 68 | 0 | 88 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.5670 | 91.8919 | 97.4026 | 86.9492 | 68 | 6 | 75 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 86.7063 | 68 | 3 | 67 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 86.9650 | 68 | 3 | 67 | 0 | 0 | ||