PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 89.8305 | 66 | 3 | 66 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | homalt | 65.3465 | 57.8947 | 75.0000 | 76.9029 | 66 | 48 | 66 | 22 | 21 | 95.4545 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.2359 | 35.4839 | 66.3366 | 79.0456 | 66 | 120 | 67 | 34 | 34 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.4172 | 77.6471 | 100.0000 | 57.9832 | 66 | 19 | 50 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 54.3940 | 75.8621 | 42.3963 | 99.8352 | 66 | 21 | 92 | 125 | 2 | 1.6000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 46.0465 | 32.0388 | 81.8182 | 76.5957 | 66 | 140 | 18 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2481 | 98.5075 | 100.0000 | 83.5476 | 66 | 1 | 64 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.0189 | 80.4878 | 85.7143 | 91.6847 | 66 | 16 | 66 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.7998 | 95.6522 | 56.1983 | 91.6031 | 66 | 3 | 68 | 53 | 18 | 33.9623 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.1493 | 66 | 3 | 66 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 75.3731 | 66 | 7 | 66 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 77.7778 | 66 | 6 | 66 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.5983 | 66 | 3 | 66 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.5882 | 92.9577 | 56.8966 | 51.0549 | 66 | 5 | 66 | 50 | 50 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 94.2857 | 92.9577 | 95.6522 | 93.7838 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 94.2857 | 92.9577 | 95.6522 | 93.9314 | 66 | 5 | 66 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.0588 | 97.0588 | 97.0588 | 71.0638 | 66 | 2 | 66 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.9522 | 71.7391 | 87.7778 | 55.4455 | 66 | 26 | 79 | 11 | 10 | 90.9091 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.8460 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | * | 58.7189 | 62.2642 | 55.5556 | 96.4296 | 66 | 40 | 70 | 56 | 31 | 55.3571 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.3084 | 66 | 3 | 66 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.2655 | 66 | 3 | 66 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3848 | 95.6522 | 89.3333 | 91.3793 | 66 | 3 | 67 | 8 | 4 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | hetalt | 74.1573 | 58.9286 | 100.0000 | 95.6405 | 66 | 46 | 65 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5394 | 98.5075 | 98.5714 | 90.5914 | 66 | 1 | 138 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.6732 | 71.7391 | 84.6774 | 54.4118 | 66 | 26 | 105 | 19 | 19 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | homalt | 94.2857 | 89.1892 | 100.0000 | 22.3529 | 66 | 8 | 66 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.4348 | 66 | 3 | 66 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | het | 69.8630 | 54.5455 | 97.1429 | 97.2167 | 66 | 55 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.5000 | 71.7391 | 97.0588 | 60.2339 | 66 | 26 | 66 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.3790 | 66 | 3 | 66 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 89.3142 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 60.8295 | 43.7086 | 100.0000 | 34.7826 | 66 | 85 | 75 | 0 | 0 | ||
| ckim-isaac | SNP | * | tech_badpromoters | het | 91.6667 | 85.7143 | 98.5075 | 37.9630 | 66 | 11 | 66 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | tech_badpromoters | * | 94.9640 | 91.6667 | 98.5075 | 27.9570 | 66 | 6 | 66 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 79.1409 | 75.8621 | 82.7160 | 87.3635 | 66 | 21 | 67 | 14 | 11 | 78.5714 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |