PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52251-52300 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 97.7099 | 96.9697 | 98.4615 | 96.5608 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.8054 | 92.7536 | 92.8571 | 88.0342 | 64 | 5 | 65 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.6522 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | hetalt | 75.3022 | 64.6465 | 90.1639 | 76.8061 | 64 | 35 | 55 | 6 | 2 | 33.3333 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | * | 50.5929 | 36.3636 | 83.1169 | 85.4717 | 64 | 112 | 64 | 13 | 11 | 84.6154 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.4998 | 94.1176 | 96.9231 | 69.9074 | 64 | 4 | 63 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 61.8683 | 67.3684 | 57.1984 | 66.9241 | 64 | 31 | 147 | 110 | 43 | 39.0909 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 70.3456 | 56.1404 | 94.1748 | 98.0570 | 64 | 50 | 97 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 77.5362 | 64 | 9 | 62 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 77.8947 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 71.9828 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.2406 | 94.1176 | 98.4615 | 73.6842 | 64 | 4 | 64 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5441 | 77.1084 | 98.6111 | 27.2727 | 64 | 19 | 71 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.9697 | 95.5224 | 98.4615 | 84.3373 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 87.2798 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.0513 | 69.5652 | 100.0000 | 59.4937 | 64 | 28 | 64 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 81.9484 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | func_cds | homalt | 92.7536 | 86.4865 | 100.0000 | 23.8095 | 64 | 10 | 64 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.3864 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 3.3195 | 0.0000 | 0.0000 | 64 | 1864 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 89.3791 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.0588 | 31.0680 | 96.9697 | 73.0612 | 64 | 142 | 64 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.1822 | 76.1905 | 84.6154 | 73.4694 | 64 | 20 | 33 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 73.0417 | 73.5632 | 72.5275 | 81.8363 | 64 | 23 | 66 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 35.3662 | 31.0680 | 41.0448 | 83.2080 | 64 | 142 | 55 | 79 | 42 | 53.1646 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | * | 88.5933 | 87.6712 | 89.5349 | 90.3695 | 64 | 9 | 77 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | het | 96.7603 | 96.9697 | 96.5517 | 94.2829 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | het | 96.7603 | 96.9697 | 96.5517 | 94.4391 | 64 | 2 | 112 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 84.7682 | 73.5632 | 100.0000 | 83.5821 | 64 | 23 | 66 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 75.2896 | 64 | 9 | 64 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 85.2874 | 64 | 3 | 64 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 99.2248 | 98.4615 | 100.0000 | 85.7143 | 64 | 1 | 64 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 92.7536 | 87.6712 | 98.4615 | 72.9167 | 64 | 9 | 64 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 73.7705 | 64 | 9 | 64 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4615 | 98.4615 | 98.4615 | 84.9188 | 64 | 1 | 64 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | homalt | 92.0863 | 86.4865 | 98.4615 | 24.4186 | 64 | 10 | 64 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.7759 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.9391 | 31.0680 | 18.1818 | 56.7921 | 64 | 142 | 48 | 216 | 4 | 1.8519 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.0421 | 92.7536 | 33.3333 | 92.3171 | 64 | 5 | 63 | 126 | 5 | 3.9683 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | het | 80.7151 | 96.9697 | 69.1275 | 96.5865 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | het | 80.7151 | 96.9697 | 69.1275 | 96.6682 | 64 | 2 | 103 | 46 | 12 | 26.0870 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.1156 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1706 | 96.9697 | 95.3846 | 89.0756 | 64 | 2 | 62 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | * | 79.8890 | 78.0488 | 81.8182 | 91.2201 | 64 | 18 | 63 | 14 | 9 | 64.2857 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.5715 | 13.2114 | 46.4481 | 71.1356 | 65 | 427 | 85 | 98 | 77 | 78.5714 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 7.4541 | 0.0000 | 0.0000 | 65 | 807 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.1287 | 65 | 2 | 65 | 0 | 0 | ||