PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52101-52150 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8750 | 96.8750 | 96.8750 | 84.6154 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 84.5000 | 62 | 2 | 62 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 90.3226 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1240 | 93.9394 | 98.4127 | 96.2985 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1240 | 93.9394 | 98.4127 | 96.4286 | 62 | 4 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.5529 | 87.3239 | 94.0299 | 48.4615 | 62 | 9 | 63 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8498 | 95.3846 | 98.3607 | 81.8452 | 62 | 3 | 60 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 74.4856 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.6863 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 87.3494 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.1240 | 96.8750 | 95.3846 | 94.3674 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.0992 | 93.9394 | 98.3607 | 89.4646 | 62 | 4 | 60 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m1_e0 | het | 84.3537 | 96.8750 | 74.6988 | 93.2134 | 62 | 2 | 62 | 21 | 19 | 90.4762 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 83.7745 | 72.9412 | 98.3871 | 66.6667 | 62 | 23 | 61 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 58.2160 | 41.0596 | 100.0000 | 66.4865 | 62 | 89 | 62 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 62 | 16643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 62 | 16643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 12.5633 | 8.8953 | 21.3793 | 49.9136 | 62 | 635 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 29.1765 | 45.9259 | 21.3793 | 49.5652 | 62 | 73 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | het | 93.2430 | 96.8750 | 89.8734 | 86.2609 | 62 | 2 | 71 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | * | 91.8292 | 86.1111 | 98.3607 | 51.2000 | 62 | 10 | 60 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 49.6165 | 35.4286 | 82.7586 | 60.8108 | 62 | 113 | 24 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4747 | 72.9412 | 89.7436 | 60.2041 | 62 | 23 | 35 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6378 | 96.8750 | 98.4127 | 85.6818 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 91.4286 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 83.7838 | 72.0930 | 100.0000 | 72.0000 | 62 | 24 | 63 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3595 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4699 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | hetalt | 91.8519 | 86.1111 | 98.4127 | 77.2563 | 62 | 10 | 62 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.9748 | 62 | 2 | 62 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.5172 | 82.6667 | 88.5714 | 44.4444 | 62 | 13 | 62 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6378 | 95.3846 | 100.0000 | 87.3727 | 62 | 3 | 62 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.8968 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.9024 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 71.2644 | 91.1765 | 99.9005 | 62 | 25 | 62 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 94.6565 | 93.9394 | 95.3846 | 96.6955 | 62 | 4 | 62 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 94.6565 | 93.9394 | 95.3846 | 96.8059 | 62 | 4 | 62 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.9394 | 91.1765 | 96.8750 | 67.6768 | 62 | 6 | 62 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.6652 | 61.3861 | 61.9469 | 89.2176 | 62 | 39 | 70 | 43 | 11 | 25.5814 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.1240 | 96.8750 | 95.3846 | 83.7093 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 94.9763 | 96.8750 | 93.1507 | 89.2647 | 62 | 2 | 68 | 5 | 4 | 80.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 46.1295 | 40.0000 | 54.4776 | 81.4147 | 62 | 93 | 73 | 61 | 39 | 63.9344 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |