PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51651-51700 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 86.3432 | 96.6102 | 78.0488 | 75.0760 | 57 | 2 | 64 | 18 | 18 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6276 | 96.6102 | 98.6667 | 60.1064 | 57 | 2 | 74 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | * | 54.0541 | 50.0000 | 58.8235 | 80.7547 | 57 | 57 | 60 | 42 | 24 | 57.1429 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e0 | * | 53.4759 | 49.1379 | 58.6538 | 81.9130 | 57 | 59 | 61 | 43 | 25 | 58.1395 | |
| anovak-vg | INDEL | I6_15 | map_l100_m2_e1 | * | 53.2425 | 49.1379 | 58.0952 | 82.0819 | 57 | 59 | 61 | 44 | 25 | 56.8182 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | het | 77.7080 | 80.2817 | 75.2941 | 89.6341 | 57 | 14 | 64 | 21 | 11 | 52.3810 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | het | 78.0093 | 80.2817 | 75.8621 | 89.5558 | 57 | 14 | 66 | 21 | 11 | 52.3810 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 94.3580 | 57 | 0 | 57 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 78.7004 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.9937 | 57 | 3 | 57 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 94.1418 | 57 | 3 | 57 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.9362 | 86.3636 | 91.6667 | 83.5616 | 57 | 9 | 55 | 5 | 1 | 20.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4359 | 95.0000 | 100.0000 | 78.8104 | 57 | 3 | 57 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_siren | hetalt | 78.6581 | 67.8571 | 93.5484 | 87.0293 | 57 | 27 | 58 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | het | 60.9393 | 45.2381 | 93.3333 | 89.3993 | 57 | 69 | 56 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.0635 | 85.2941 | 100.0000 | 55.3846 | 58 | 10 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.6667 | 93.5484 | 100.0000 | 84.0970 | 58 | 4 | 59 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.9565 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.1014 | 58 | 2 | 58 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.7599 | 69.8795 | 98.5075 | 30.9278 | 58 | 25 | 66 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.8678 | 95.0820 | 96.6667 | 89.2665 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 89.5105 | 58 | 3 | 58 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | het | 96.6667 | 95.0820 | 98.3051 | 92.1333 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | het | 96.6667 | 95.0820 | 98.3051 | 92.3177 | 58 | 3 | 58 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.8218 | 95.0820 | 90.6667 | 66.3677 | 58 | 3 | 68 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0554 | 58 | 2 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.2066 | 58 | 2 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_siren | hetalt | 72.8695 | 58.5859 | 96.3636 | 78.5992 | 58 | 41 | 53 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 97.4790 | 96.6667 | 98.3051 | 96.2753 | 58 | 2 | 58 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.8812 | 93.5484 | 98.3333 | 84.2520 | 58 | 4 | 59 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0820 | 95.0820 | 95.0820 | 86.8817 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.6445 | 58 | 2 | 58 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.8075 | 58 | 2 | 58 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | hetalt | 60.7330 | 43.9394 | 98.3051 | 86.6817 | 58 | 74 | 58 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.3980 | 95.0820 | 86.1538 | 71.6157 | 58 | 3 | 56 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.1325 | 64.4444 | 54.6296 | 93.1904 | 58 | 32 | 59 | 49 | 15 | 30.6122 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 48.2456 | 58 | 1 | 57 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1718 | 93.5484 | 42.2096 | 64.5582 | 58 | 4 | 149 | 204 | 8 | 3.9216 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | het | 98.3051 | 98.3051 | 98.3051 | 27.1605 | 58 | 1 | 58 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1453 | 98.3051 | 100.0000 | 63.9752 | 58 | 1 | 58 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.5056 | 67.4419 | 96.8254 | 74.5968 | 58 | 28 | 61 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 88.0357 | 58 | 2 | 67 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 34.7605 | 22.3938 | 77.6316 | 77.3134 | 58 | 201 | 59 | 17 | 17 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.2517 | 58 | 2 | 58 | 0 | 0 | ||