PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51301-51350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.6429 | 92.9825 | 96.3636 | 99.4786 | 53 | 4 | 53 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.4630 | 53 | 0 | 53 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_siren | hetalt | 69.7368 | 53.5354 | 100.0000 | 90.6028 | 53 | 46 | 53 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 40.1515 | 25.7282 | 91.3793 | 89.3186 | 53 | 153 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9624 | 65.4321 | 96.4286 | 87.1854 | 53 | 28 | 54 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 55.4705 | 58.8889 | 52.4272 | 93.3117 | 53 | 37 | 54 | 49 | 21 | 42.8571 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 36.8928 | 25.8537 | 64.3836 | 82.9837 | 53 | 152 | 47 | 26 | 1 | 3.8462 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 36.8928 | 25.8537 | 64.3836 | 82.9837 | 53 | 152 | 47 | 26 | 1 | 3.8462 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | homalt | 75.3723 | 82.8125 | 69.1589 | 84.6705 | 53 | 11 | 74 | 33 | 30 | 90.9091 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 60.2273 | 86.8852 | 46.0870 | 64.8318 | 53 | 8 | 53 | 62 | 60 | 96.7742 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.3104 | 96.3636 | 98.2759 | 72.6415 | 53 | 2 | 57 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 67.0807 | 53 | 0 | 53 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9825 | 86.8852 | 100.0000 | 58.9147 | 53 | 8 | 53 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 68.0618 | 59.5506 | 79.4118 | 68.0751 | 53 | 36 | 54 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 89.0756 | 88.3333 | 89.8305 | 97.1036 | 53 | 7 | 53 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.5760 | 53 | 0 | 53 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.1174 | 53 | 0 | 53 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.4646 | 89.8305 | 77.9412 | 76.1404 | 53 | 6 | 53 | 15 | 14 | 93.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3793 | 86.8852 | 96.3636 | 58.3333 | 53 | 8 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.1088 | 57.6087 | 96.3636 | 60.1449 | 53 | 39 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_siren | hetalt | 95.4955 | 92.9825 | 98.1481 | 75.0000 | 53 | 4 | 53 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | * | 61.6279 | 45.2991 | 96.3636 | 90.1434 | 53 | 64 | 53 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.6992 | 74.6479 | 85.4839 | 48.7603 | 53 | 18 | 53 | 9 | 7 | 77.7778 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.4679 | 70.6667 | 70.2703 | 56.2130 | 53 | 22 | 52 | 22 | 19 | 86.3636 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1987 | 60.9195 | 82.8125 | 80.6647 | 53 | 34 | 53 | 11 | 8 | 72.7273 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.8053 | 92.9825 | 94.6429 | 99.4760 | 53 | 4 | 53 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.8053 | 92.9825 | 94.6429 | 99.4757 | 53 | 4 | 53 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 76.0181 | 53 | 0 | 53 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.3030 | 89.8305 | 72.6027 | 74.2049 | 53 | 6 | 53 | 20 | 19 | 95.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1739 | 86.8852 | 98.1481 | 59.7015 | 53 | 8 | 53 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0307 | 62.3529 | 67.9487 | 83.1533 | 53 | 32 | 53 | 25 | 21 | 84.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.8053 | 88.3333 | 100.0000 | 71.2121 | 53 | 7 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | het | 92.2036 | 88.3333 | 96.4286 | 92.1897 | 53 | 7 | 54 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_siren | hetalt | 84.8000 | 73.6111 | 100.0000 | 78.3333 | 53 | 19 | 26 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1987 | 60.9195 | 82.8125 | 82.7957 | 53 | 34 | 53 | 11 | 5 | 45.4545 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 76.0181 | 53 | 0 | 53 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.3636 | 92.9825 | 100.0000 | 99.5388 | 53 | 4 | 53 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.9091 | 53 | 0 | 53 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 90.5983 | 88.3333 | 92.9825 | 96.4574 | 53 | 7 | 53 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 12.6208 | 7.7147 | 34.6667 | 87.4161 | 53 | 634 | 52 | 98 | 77 | 78.5714 | |
| ciseli-custom | INDEL | I1_5 | func_cds | het | 78.5185 | 89.8305 | 69.7368 | 38.2114 | 53 | 6 | 53 | 23 | 13 | 56.5217 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 40.5704 | 26.3682 | 87.9310 | 93.3333 | 53 | 148 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.5297 | 77.9412 | 87.6923 | 96.3565 | 53 | 15 | 57 | 8 | 4 | 50.0000 | |