PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51201-51250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 72.5832 | 98.0769 | 57.6087 | 86.0395 | 51 | 1 | 53 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.7750 | 58.6207 | 60.9756 | 96.0271 | 51 | 36 | 50 | 32 | 22 | 68.7500 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 9.6226 | 0.0000 | 0.0000 | 51 | 479 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 51.7766 | 41.1290 | 69.8630 | 99.9464 | 51 | 73 | 51 | 22 | 18 | 81.8182 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 72.6829 | 51 | 8 | 56 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5631 | 51 | 1 | 52 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.2425 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.4664 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 91.0714 | 85.0000 | 98.0769 | 95.5932 | 51 | 9 | 51 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6266 | 51 | 1 | 52 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4781 | 92.7273 | 96.2963 | 63.5135 | 51 | 4 | 52 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.7273 | 89.4737 | 96.2264 | 99.5017 | 51 | 6 | 51 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 82.2581 | 77.2727 | 87.9310 | 97.8716 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 82.2581 | 77.2727 | 87.9310 | 97.9454 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 9.6226 | 0.0000 | 0.0000 | 51 | 479 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.8268 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.5780 | 89.4737 | 98.0769 | 99.4056 | 51 | 6 | 51 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | het | 91.0714 | 86.4407 | 96.2264 | 85.3591 | 51 | 8 | 51 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9967 | 98.0769 | 97.9167 | 84.3648 | 51 | 1 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 94.9219 | 51 | 1 | 52 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 27.5000 | 51 | 32 | 58 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0769 | 98.0769 | 98.0769 | 77.7778 | 51 | 1 | 51 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.2581 | 75.0000 | 91.0714 | 96.6981 | 51 | 17 | 51 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 72.8872 | 59.3023 | 94.5455 | 73.4300 | 51 | 35 | 52 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 71.1860 | 58.6207 | 90.6077 | 99.6597 | 51 | 36 | 328 | 34 | 30 | 88.2353 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | het | 95.3582 | 96.2264 | 94.5055 | 96.7254 | 51 | 2 | 86 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 82.9268 | 82.2581 | 83.6066 | 84.9383 | 51 | 11 | 51 | 10 | 2 | 20.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.3091 | 73.9130 | 92.8571 | 85.9649 | 51 | 18 | 52 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | het | 83.6066 | 96.2264 | 73.9130 | 98.5907 | 51 | 2 | 51 | 18 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 88.3178 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.1859 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6937 | 88.1356 | 100.0000 | 73.3645 | 52 | 7 | 57 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 59.2308 | 52 | 0 | 53 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 49.6649 | 76.4706 | 36.7742 | 94.0316 | 52 | 16 | 57 | 98 | 4 | 4.0816 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.5108 | 62.6506 | 98.2456 | 36.6667 | 52 | 31 | 56 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 69.2731 | 53.6082 | 97.8723 | 31.8841 | 52 | 45 | 46 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 73.7885 | 60.4651 | 94.6429 | 73.7089 | 52 | 34 | 53 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1705 | 52 | 0 | 53 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3746 | 94.5455 | 98.2759 | 71.1443 | 52 | 3 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.5924 | 91.2281 | 98.2143 | 99.2499 | 52 | 5 | 55 | 1 | 1 | 100.0000 | |