PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51151-51200 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | * | 94.3396 | 94.3396 | 94.3396 | 92.7397 | 50 | 3 | 50 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6336 | 50 | 2 | 51 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.7313 | 96.1538 | 95.3125 | 80.8383 | 50 | 2 | 61 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 90.7308 | 50 | 0 | 48 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 61.4577 | 58.6207 | 64.5833 | 99.8482 | 51 | 36 | 31 | 17 | 5 | 29.4118 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.6066 | 0.0000 | 0.0000 | 51 | 10 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.0735 | 0.0000 | 0.0000 | 51 | 1201 | 0 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3150 | 96.2264 | 68.9189 | 98.4901 | 51 | 2 | 51 | 23 | 1 | 4.3478 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 58.9323 | 76.1194 | 48.0769 | 85.1216 | 51 | 16 | 50 | 54 | 51 | 94.4444 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 23.9437 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 73.8318 | 51 | 8 | 56 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.4643 | 51 | 10 | 51 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | het | 69.3878 | 96.2264 | 54.2553 | 97.9008 | 51 | 2 | 51 | 43 | 2 | 4.6512 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 9.8376 | 5.2308 | 82.4742 | 81.6635 | 51 | 924 | 80 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.2975 | 18.9591 | 48.7288 | 61.9968 | 51 | 218 | 230 | 242 | 193 | 79.7521 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | het | 59.3023 | 42.1488 | 100.0000 | 98.9699 | 51 | 70 | 51 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | het | 64.9682 | 48.1132 | 100.0000 | 97.9260 | 51 | 55 | 51 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 0.4992 | 0.0000 | 0.0000 | 51 | 10165 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 73.0769 | 51 | 1 | 49 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 96.0426 | 51 | 1 | 52 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | het | 91.0871 | 85.0000 | 98.1132 | 91.4239 | 51 | 9 | 52 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 83.2143 | 51 | 1 | 47 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5932 | 51 | 1 | 52 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6007 | 51 | 1 | 52 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.1416 | 98.0769 | 88.6792 | 87.1671 | 51 | 1 | 47 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 59.6899 | 51 | 1 | 52 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 31.7647 | 51 | 32 | 58 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.7139 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.2264 | 92.7273 | 100.0000 | 63.8889 | 51 | 4 | 52 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 73.9130 | 51 | 8 | 54 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0714 | 83.6066 | 100.0000 | 54.0541 | 51 | 10 | 51 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | het | 91.8919 | 96.2264 | 87.9310 | 97.3827 | 51 | 2 | 51 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0581 | 98.0769 | 98.0392 | 78.7500 | 51 | 1 | 50 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0241 | 77.2727 | 82.9787 | 93.9040 | 51 | 15 | 39 | 8 | 2 | 25.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | * | 83.1087 | 87.9310 | 78.7879 | 94.7577 | 51 | 7 | 52 | 14 | 7 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_siren | hetalt | 75.5556 | 60.7143 | 100.0000 | 88.1119 | 51 | 33 | 51 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 72.5275 | 51 | 1 | 50 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 64.9682 | 51 | 1 | 55 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 37.1972 | 98.0769 | 22.9508 | 63.1197 | 51 | 1 | 70 | 235 | 2 | 0.8511 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 79.1195 | 85.0000 | 74.0000 | 91.9094 | 51 | 9 | 74 | 26 | 1 | 3.8462 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 74.4526 | 59.3023 | 100.0000 | 68.1818 | 51 | 35 | 42 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | het | 76.1194 | 96.2264 | 62.9630 | 98.4033 | 51 | 2 | 51 | 30 | 3 | 10.0000 | |