PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D1_5 | segdup | hetalt | 97.0297 | 94.2308 | 100.0000 | 95.7018 | 49 | 3 | 49 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | het | 91.5888 | 92.4528 | 90.7407 | 96.9849 | 49 | 4 | 49 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 90.4556 | 96.0784 | 85.4545 | 94.3123 | 49 | 2 | 47 | 8 | 2 | 25.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.0323 | 74.2424 | 84.4828 | 92.9952 | 49 | 17 | 49 | 9 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 74.3842 | 49 | 10 | 52 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0078 | 49 | 0 | 49 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.6667 | 74.2424 | 90.7407 | 94.0463 | 49 | 17 | 49 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2464 | 49 | 0 | 49 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m0_e0 | het | 91.7431 | 94.3396 | 89.2857 | 97.4110 | 50 | 3 | 50 | 6 | 1 | 16.6667 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 63.8889 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8462 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.0273 | 96.1538 | 97.9167 | 85.1852 | 50 | 2 | 47 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6780 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 91.9753 | 50 | 0 | 50 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 59.8425 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3425 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | segdup | homalt | 99.0099 | 100.0000 | 98.0392 | 91.6938 | 50 | 0 | 50 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0901 | 81.9672 | 100.0000 | 54.1284 | 50 | 11 | 50 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 60.1562 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.1880 | 60.2410 | 100.0000 | 32.9412 | 50 | 33 | 57 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 91.6129 | 50 | 0 | 50 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 74.1463 | 50 | 9 | 53 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 77.6313 | 68.4932 | 89.5833 | 74.3316 | 50 | 23 | 43 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | homalt | 98.0392 | 100.0000 | 96.1538 | 92.5714 | 50 | 0 | 50 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.9540 | 81.9672 | 56.5891 | 68.9157 | 50 | 11 | 146 | 112 | 91 | 81.2500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 32.0000 | 50 | 1 | 51 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.1059 | 96.1538 | 98.0769 | 54.3860 | 50 | 2 | 51 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | * | 73.8916 | 64.1026 | 87.2093 | 99.0927 | 50 | 28 | 75 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.0042 | 73.5294 | 97.9592 | 95.6328 | 50 | 18 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 32.8947 | 50 | 1 | 51 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6411 | 87.7193 | 98.1481 | 99.2565 | 50 | 7 | 53 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.3571 | 90.9091 | 98.0769 | 59.0551 | 50 | 5 | 51 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8210 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 54.4643 | 50 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6596 | 50 | 2 | 51 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9091 | 87.7193 | 94.3396 | 99.4917 | 50 | 7 | 50 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2967 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 72.5389 | 50 | 9 | 53 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 77.2449 | 73.5294 | 81.3559 | 62.8931 | 50 | 18 | 48 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5849 | 13.9276 | 76.9231 | 73.7903 | 50 | 309 | 50 | 15 | 14 | 93.3333 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e1 | * | 58.3125 | 51.5464 | 67.1233 | 96.0879 | 50 | 47 | 49 | 24 | 21 | 87.5000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5379 | 0.0000 | 0.0000 | 50 | 9246 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 29.8082 | 20.6612 | 53.4884 | 75.0000 | 50 | 192 | 46 | 40 | 2 | 5.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 80.8625 | 80.6452 | 81.0811 | 77.1605 | 50 | 12 | 60 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 23.5294 | 13.9276 | 75.7576 | 73.7052 | 50 | 309 | 50 | 16 | 14 | 87.5000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.5382 | 0.0000 | 0.0000 | 50 | 9241 | 0 | 0 | 0 | ||