PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50651-50700 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 92.1769 | 46 | 1 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0553 | 46 | 0 | 46 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | segdup | hetalt | 96.8421 | 93.8776 | 100.0000 | 90.2335 | 46 | 3 | 46 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.3396 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.4619 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 90.7480 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.0476 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.6058 | 46 | 1 | 46 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 24.5902 | 46 | 3 | 46 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m2_e1 | het | 98.9247 | 97.8723 | 100.0000 | 87.6033 | 46 | 1 | 45 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9293 | 86.7925 | 100.0000 | 60.7477 | 46 | 7 | 42 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 96.7606 | 46 | 2 | 44 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.8421 | 93.8776 | 100.0000 | 25.8065 | 46 | 3 | 46 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 86.7925 | 100.0000 | 76.6667 | 98.0855 | 46 | 0 | 46 | 14 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 95.8333 | 97.8723 | 93.8776 | 94.8038 | 46 | 1 | 46 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 96.4570 | 97.8723 | 95.0820 | 91.6438 | 46 | 1 | 58 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 95.8333 | 100.0000 | 92.0000 | 95.3747 | 46 | 0 | 46 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.1759 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | map_siren | hetalt | 87.6190 | 80.7018 | 95.8333 | 80.9524 | 46 | 11 | 46 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | hetalt | 0.0000 | 95.8333 | 0.0000 | 0.0000 | 46 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.9561 | 46 | 1 | 44 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | * | 94.8454 | 100.0000 | 90.1961 | 97.3940 | 46 | 0 | 46 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8303 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | tech_badpromoters | * | 75.4098 | 60.5263 | 100.0000 | 71.4286 | 46 | 30 | 46 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | segdup | * | 88.4615 | 79.3103 | 100.0000 | 96.4259 | 46 | 12 | 47 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.7562 | 62.1622 | 93.7500 | 89.5879 | 46 | 28 | 45 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | het | 87.6190 | 86.7925 | 88.4615 | 96.4817 | 46 | 7 | 46 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.1944 | 52.8736 | 64.7059 | 67.8030 | 46 | 41 | 55 | 30 | 29 | 96.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.9597 | 62.1622 | 94.3925 | 87.7434 | 46 | 28 | 101 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 53.1792 | 36.2205 | 100.0000 | 47.1264 | 46 | 81 | 46 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | het | 86.7925 | 100.0000 | 76.6667 | 94.4954 | 46 | 0 | 46 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.7892 | 42.5926 | 45.0549 | 82.5000 | 46 | 62 | 41 | 50 | 25 | 50.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | * | 86.0819 | 79.3103 | 94.1176 | 91.1917 | 46 | 12 | 48 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 41.7658 | 28.7500 | 76.3158 | 69.6000 | 46 | 114 | 58 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.9387 | 93.8776 | 94.0000 | 79.0795 | 46 | 3 | 47 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.4121 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.8454 | 90.1961 | 100.0000 | 89.8925 | 46 | 5 | 47 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m0_e0 | * | 96.8421 | 100.0000 | 93.8776 | 96.7463 | 46 | 0 | 46 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m0_e0 | * | 98.9247 | 97.8723 | 100.0000 | 92.0000 | 46 | 1 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.0690 | 46 | 0 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.0000 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m1_e0 | * | 92.0000 | 86.7925 | 97.8723 | 89.9573 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e0 | * | 92.0000 | 86.7925 | 97.8723 | 91.1488 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | * | 92.0000 | 86.7925 | 97.8723 | 91.3761 | 46 | 7 | 46 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.8757 | 95.8333 | 84.6154 | 94.4622 | 46 | 2 | 44 | 8 | 2 | 25.0000 | |