PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50501-50550 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.8261 | 100.0000 | 95.7447 | 83.3333 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0370 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 59.0909 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m2_e0 | het | 98.9011 | 97.8261 | 100.0000 | 90.9274 | 45 | 1 | 45 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.1619 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 82.2394 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.8643 | 95.7447 | 94.0000 | 79.3388 | 45 | 2 | 47 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.7368 | 100.0000 | 90.0000 | 82.8179 | 45 | 0 | 45 | 5 | 5 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | segdup | * | 96.7742 | 95.7447 | 97.8261 | 96.5388 | 45 | 2 | 45 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7742 | 100.0000 | 93.7500 | 94.8990 | 45 | 0 | 45 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9057 | 78.9474 | 91.8367 | 99.3649 | 45 | 12 | 45 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 79.5833 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 81.7460 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 93.9666 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 95.9965 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 60.5263 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 89.7079 | 93.7500 | 86.0000 | 94.7917 | 45 | 3 | 43 | 7 | 2 | 28.5714 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 63.7097 | 45 | 0 | 45 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 90.0000 | 95.7447 | 84.9057 | 94.0382 | 45 | 2 | 45 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 91.8367 | 97.8261 | 86.5385 | 95.0617 | 45 | 1 | 45 | 7 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 61.8644 | 45 | 0 | 45 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.7447 | 91.8367 | 100.0000 | 29.6875 | 45 | 4 | 45 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.0813 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 82.1705 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.2892 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.2046 | 45 | 3 | 46 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.3713 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | segdup | hetalt | 96.7742 | 93.7500 | 100.0000 | 96.1730 | 45 | 3 | 46 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 91.7496 | 88.2353 | 95.5556 | 85.3420 | 45 | 6 | 43 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 89.1827 | 45 | 2 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9011 | 97.8261 | 100.0000 | 93.1087 | 45 | 1 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5058 | 45 | 0 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 89.1304 | 45 | 2 | 45 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | segdup | * | 96.8185 | 95.7447 | 97.9167 | 93.8931 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | het | 81.9153 | 76.2712 | 88.4615 | 80.2281 | 45 | 14 | 46 | 6 | 5 | 83.3333 | |
| mlin-fermikit | INDEL | I6_15 | segdup | homalt | 96.7505 | 95.7447 | 97.7778 | 90.9820 | 45 | 2 | 44 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 52.7792 | 76.2712 | 40.3509 | 76.8057 | 45 | 14 | 92 | 136 | 4 | 2.9412 | |
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.1397 | 100.0000 | 45 | 134 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | het | 95.9849 | 95.7447 | 96.2264 | 91.7317 | 45 | 2 | 51 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.3603 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.3786 | 97.8261 | 78.9474 | 94.7368 | 45 | 1 | 45 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.1765 | 66.1765 | 66.1765 | 97.5801 | 45 | 23 | 45 | 23 | 13 | 56.5217 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 38.7893 | 24.1935 | 97.7778 | 41.5584 | 45 | 141 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | hetalt | 66.0377 | 62.5000 | 70.0000 | 76.1905 | 45 | 27 | 14 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.9606 | 65.2174 | 64.7059 | 72.5806 | 45 | 24 | 22 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | het | 85.0633 | 75.0000 | 98.2456 | 77.4704 | 45 | 15 | 56 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 97.1240 | 45 | 1 | 45 | 3 | 2 | 66.6667 | |