PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50401-50450 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 95.4457 | 44 | 1 | 44 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.9880 | 44 | 0 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4555 | 44 | 5 | 44 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.7122 | 93.6170 | 95.8333 | 81.2500 | 44 | 3 | 46 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0749 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 67.3913 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 70.0000 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 96.7033 | 93.6170 | 100.0000 | 91.0020 | 44 | 3 | 44 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 96.7033 | 95.6522 | 97.7778 | 95.1246 | 44 | 2 | 44 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.0484 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.9086 | 95.6522 | 79.6296 | 95.3807 | 44 | 2 | 43 | 11 | 4 | 36.3636 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.6463 | 91.6667 | 97.8261 | 89.7092 | 44 | 4 | 45 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4229 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.8503 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.2421 | 44 | 1 | 44 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | het | 49.5474 | 41.5094 | 61.4458 | 95.8870 | 44 | 62 | 51 | 32 | 4 | 12.5000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 90.8163 | 44 | 4 | 45 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.3720 | 44 | 5 | 44 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.4961 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.0415 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8383 | 44 | 1 | 44 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 97.7778 | 0.0000 | 0.0000 | 44 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 47.0588 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 94.6237 | 95.6522 | 93.6170 | 97.1567 | 44 | 2 | 44 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 89.7959 | 0.0000 | 0.0000 | 44 | 5 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.1271 | 93.6170 | 94.6429 | 77.7778 | 44 | 3 | 53 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | segdup | hetalt | 94.6237 | 89.7959 | 100.0000 | 90.4968 | 44 | 5 | 44 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.3696 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | homalt | 57.5163 | 40.3670 | 100.0000 | 93.4621 | 44 | 65 | 44 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 30.7692 | 61.9718 | 20.4651 | 43.1217 | 44 | 27 | 44 | 171 | 145 | 84.7953 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 3.7225 | 0.0000 | 0.0000 | 44 | 1138 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 45.5959 | 38.9381 | 55.0000 | 97.4367 | 44 | 69 | 44 | 36 | 27 | 75.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 94.3305 | 44 | 1 | 44 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.2421 | 44 | 1 | 44 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.7958 | 95.6522 | 81.1321 | 96.3322 | 44 | 2 | 43 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 53.6082 | 45 | 0 | 45 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 88.2353 | 0.0000 | 0.0000 | 45 | 6 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 94.9817 | 95.7447 | 94.2308 | 91.3621 | 45 | 2 | 49 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 96.3923 | 97.8261 | 95.0000 | 91.5730 | 45 | 1 | 57 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.2134 | 45 | 0 | 45 | 0 | 0 | ||