PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
49951-50000 / 86044 show all
ndellapenna-hhgaINDELI6_15func_cds*
98.8235
97.6744
100.0000
38.2353
4214200
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_quadTR_51to200het
75.6258
63.6364
93.1818
93.3131
42244133
100.0000
ltrigg-rtg2INDELD16_PLUSmap_l100_m2_e0het
91.2052
87.5000
95.2381
86.0000
4264021
50.0000
ltrigg-rtg2INDELD6_15func_cds*
98.8235
97.6744
100.0000
48.1481
4214200
ltrigg-rtg2INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
81.6591
71.1864
95.7447
71.8563
42174522
100.0000
ltrigg-rtg2INDELI6_15func_cds*
98.8235
97.6744
100.0000
33.3333
4214200
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
83.1683
97.6744
72.4138
74.4493
421421614
87.5000
jpowers-varprowlINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
78.5047
79.2453
77.7778
68.2353
4211421212
100.0000
jpowers-varprowlINDELI1_5map_l250_m2_e1homalt
94.3820
91.3043
97.6744
93.2390
4244211
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e0het
71.7949
68.8525
75.0000
88.1104
4219421414
100.0000
jpowers-varprowlINDELI6_15map_l100_m2_e1het
71.7949
68.8525
75.0000
88.3090
4219421414
100.0000
jpowers-varprowlSNPtitech_badpromotershet
94.3820
95.4545
93.3333
56.7308
4224230
0.0000
ltrigg-rtg1INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
94.3820
91.3043
97.6744
49.4118
4244211
100.0000
ltrigg-rtg1INDELD1_5map_l100_m2_e1hetalt
90.3226
82.3529
100.0000
93.2039
4294200
ltrigg-rtg1INDELD6_15func_cds*
98.8235
97.6744
100.0000
46.8354
4214200
ltrigg-rtg1INDELD6_15segduphetalt
92.3077
85.7143
100.0000
90.5702
4274300
ltrigg-rtg1INDELI16_PLUSsegdup*
94.3820
89.3617
100.0000
89.7311
4254200
jli-customSNP*map_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
jli-customSNPtvmap_l100_m2_e0hetalt
98.8235
100.0000
97.6744
75.2874
4204211
100.0000
ltrigg-rtg1INDELI6_15func_cds*
98.8235
97.6744
100.0000
31.1475
4214200
ltrigg-rtg1INDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.6744
95.4545
100.0000
76.7956
4224200
ltrigg-rtg1SNP*map_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
ltrigg-rtg1SNPtvmap_l100_m2_e0hetalt
100.0000
100.0000
100.0000
65.8537
4204200
jmaeng-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.7805
4224200
jpowers-varprowlINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
68.8525
61.7647
77.7778
97.8947
4226421211
91.6667
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
19.1153
11.0818
69.4915
82.2823
42337411811
61.1111
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.6099
0.0000
0.0000
426844000
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
17.0622
9.6110
75.9259
78.6561
42395411313
100.0000
jmaeng-gatkINDELD1_5map_l100_m2_e1hetalt
90.3226
82.3529
100.0000
92.0074
4294300
jmaeng-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6296
4234200
jmaeng-gatkINDELI6_15func_cds*
97.6744
97.6744
97.6744
41.8919
4214210
0.0000
jli-customINDELD16_PLUSmap_l100_m1_e0het
92.2335
91.3043
93.1818
93.9477
4244132
66.6667
jli-customINDELD1_5map_l100_m2_e1hetalt
89.3838
82.3529
97.7273
91.6667
4294310
0.0000
jli-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
52.8090
4214200
jli-customINDELI16_PLUSmap_sirenhet
91.3043
85.7143
97.6744
87.6791
4274210
0.0000
jli-customINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.6552
4234200
astatham-gatkSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
71.8121
4214200
astatham-gatkSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.1481
4224200
astatham-gatkSNPtvmap_l100_m2_e1hetalt
98.8235
97.6744
100.0000
71.8121
4214200
bgallagher-sentieonINDELI1_5map_l100_m1_e0hetalt
97.6744
95.4545
100.0000
87.3112
4224200
bgallagher-sentieonINDELI1_5map_l100_m2_e0hetalt
97.6744
95.4545
100.0000
88.3333
4224200
bgallagher-sentieonINDELI6_15func_cds*
97.6744
97.6744
97.6744
38.5714
4214211
100.0000
bgallagher-sentieonSNPtitech_badpromotershet
97.6744
95.4545
100.0000
48.1481
4224200
asubramanian-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
93.3333
91.3043
95.4545
67.8832
4244222
100.0000
asubramanian-gatkINDELD16_PLUSmap_l100_m2_e0het
84.4646
87.5000
81.6327
96.8161
4264092
22.2222
asubramanian-gatkINDELD1_5map_l250_m0_e0*
83.1683
91.3043
76.3636
97.8209
42442130
0.0000
asubramanian-gatkINDELD6_15func_cds*
98.8235
97.6744
100.0000
56.7010
4214200
asubramanian-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.6744
97.6744
97.6744
77.7202
4214211
100.0000
asubramanian-gatkINDELD6_15map_l125_m0_e0*
94.3820
89.3617
100.0000
94.9766
4254300
asubramanian-gatkINDELI16_PLUSmap_sirenhet
89.3617
85.7143
93.3333
93.1921
4274230
0.0000