PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48101-48150 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 88.8889 | 80.0000 | 100.0000 | 89.4737 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 88.8889 | 88.8889 | 88.8889 | 78.0488 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 80.0000 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 80.0000 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 80.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 81.2500 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 91.6961 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 89.4737 | 18 | 1 | 18 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 35.4839 | 179 | 1 | 180 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | func_cds | het | 99.1453 | 98.3051 | 100.0000 | 40.4040 | 58 | 1 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 99.1803 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 48.9796 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 4.3478 | 22 | 1 | 22 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0431 | 99.5192 | 98.5714 | 80.9264 | 207 | 1 | 207 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2443 | 99.4949 | 98.9950 | 87.0358 | 197 | 1 | 197 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2556 | 99.5025 | 99.0099 | 88.4966 | 200 | 1 | 200 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2665 | 99.5098 | 99.0244 | 88.6364 | 203 | 1 | 203 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0378 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9691 | 97.9592 | 100.0000 | 81.1024 | 48 | 1 | 48 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 50.0000 | 100.0000 | 99.9132 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.4624 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9130 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.4231 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | * | hetalt | 99.4854 | 99.8852 | 99.0888 | 49.8858 | 870 | 1 | 870 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | SNP | * | HG002complexvar | hetalt | 99.1974 | 99.6774 | 98.7220 | 36.2525 | 309 | 1 | 309 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | SNP | * | HG002compoundhet | hetalt | 99.9420 | 99.8840 | 100.0000 | 22.1519 | 861 | 1 | 861 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.2500 | 12 | 1 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9198 | 99.9599 | 99.8798 | 58.8255 | 2493 | 1 | 2493 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 99.0990 | 99.0909 | 99.1071 | 90.7970 | 109 | 1 | 111 | 1 | 0 | 0.0000 | |