PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47701-47750 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m0_e0 | het | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 75.0000 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 66.6667 | 66.6667 | 66.6667 | 78.5714 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 93.4426 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 94.0299 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.8333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 45.4545 | 6 | 1 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | tech_badpromoters | hetalt | 80.0000 | 66.6667 | 100.0000 | 33.3333 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| gduggal-snapfb | SNP | * | func_cds | homalt | 99.9570 | 99.9857 | 99.9284 | 24.3691 | 6978 | 1 | 6978 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 11.9658 | 93.3333 | 6.3927 | 89.8892 | 14 | 1 | 14 | 205 | 4 | 1.9512 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | tech_badpromoters | * | 93.1343 | 99.3631 | 87.6404 | 63.5992 | 156 | 1 | 156 | 22 | 1 | 4.5455 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | het | 89.4118 | 98.7013 | 81.7204 | 64.3678 | 76 | 1 | 76 | 17 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | * | hetalt | 78.4605 | 99.8282 | 64.6274 | 61.2500 | 581 | 1 | 581 | 318 | 23 | 7.2327 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | hetalt | 81.5842 | 99.5169 | 69.1275 | 54.1538 | 206 | 1 | 206 | 92 | 22 | 23.9130 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | SNP | ti | func_cds | homalt | 99.9716 | 99.9810 | 99.9621 | 22.5825 | 5274 | 1 | 5274 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m0_e0 | hetalt | 92.8571 | 92.8571 | 92.8571 | 89.3130 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | hetalt | 94.9153 | 96.5517 | 93.3333 | 84.4560 | 28 | 1 | 28 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | hetalt | 95.0820 | 96.6667 | 93.5484 | 84.9515 | 29 | 1 | 29 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | hetalt | 95.2381 | 96.7742 | 93.7500 | 84.5411 | 30 | 1 | 30 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.2692 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 83.9744 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.3801 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e1 | hetalt | 93.8776 | 95.8333 | 92.0000 | 85.4651 | 23 | 1 | 23 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.4615 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.3327 | 99.7921 | 91.2548 | 72.8866 | 480 | 1 | 480 | 46 | 1 | 2.1739 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.7020 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |