PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47501-47550 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | HG002complexvar | het | 90.6065 | 85.7143 | 96.0910 | 77.9776 | 6 | 1 | 1647 | 67 | 24 | 35.8209 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 77.4037 | 66.6667 | 92.2631 | 96.6489 | 2 | 1 | 477 | 40 | 5 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.4641 | 66.6667 | 89.6373 | 96.7233 | 2 | 1 | 346 | 40 | 5 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 84.9624 | 96.2875 | 0 | 1 | 226 | 40 | 3 | 7.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.0276 | 96.1532 | 0 | 1 | 178 | 39 | 2 | 5.1282 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 84.9624 | 96.2875 | 0 | 1 | 226 | 40 | 3 | 7.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.0276 | 96.1532 | 0 | 1 | 178 | 39 | 2 | 5.1282 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 94.1176 | 93.9286 | 0 | 1 | 64 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 92.4528 | 93.7204 | 0 | 1 | 49 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 77.7778 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 66.6667 | 3 | 1 | 3 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7625 | 99.5261 | 100.0000 | 43.0894 | 210 | 1 | 210 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.8383 | 98.3607 | 97.3214 | 62.5418 | 60 | 1 | 109 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 91.3043 | 4 | 1 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | * | 91.2281 | 96.2963 | 86.6667 | 94.5055 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.1704 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 95.1923 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 89.5075 | 95.0000 | 84.6154 | 94.9219 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 89.5075 | 95.0000 | 84.6154 | 95.0570 | 19 | 1 | 22 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.3804 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.2902 | 92.8571 | 82.3529 | 94.3333 | 13 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.4654 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.7246 | 93.7500 | 84.2105 | 94.4928 | 15 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.7246 | 93.7500 | 84.2105 | 94.6023 | 15 | 1 | 16 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4136 | 99.6124 | 99.2157 | 53.4672 | 257 | 1 | 253 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7021 | 99.8478 | 99.5569 | 77.2437 | 656 | 1 | 674 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 13 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 93.3333 | 0.0000 | 0.0000 | 14 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 41.9355 | 18 | 1 | 18 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 47.0588 | 7 | 1 | 9 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 47.5000 | 42 | 1 | 42 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 43.3962 | 28 | 1 | 30 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8004 | 99.7947 | 99.8062 | 63.2740 | 486 | 1 | 515 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6394 | 98.6486 | 98.6301 | 79.1429 | 73 | 1 | 72 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.9091 | 83.3333 | 100.0000 | 99.7713 | 5 | 1 | 5 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6602 | 99.7743 | 99.5465 | 28.6408 | 442 | 1 | 439 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 95.7044 | 96.5517 | 94.8718 | 91.7021 | 28 | 1 | 37 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 94.4299 | 96.8750 | 92.1053 | 92.2607 | 31 | 1 | 35 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 4 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 95.8628 | 97.4359 | 94.3396 | 91.6535 | 38 | 1 | 50 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||