PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47301-47350 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.6774 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 86.7133 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | * | map_siren | hetalt | 97.5610 | 98.7654 | 96.3855 | 74.6177 | 80 | 1 | 80 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | HG002complexvar | hetalt | 99.7579 | 99.5169 | 100.0000 | 39.2442 | 206 | 1 | 209 | 0 | 0 | ||
| ckim-dragen | SNP | ti | HG002compoundhet | hetalt | 99.9136 | 99.8273 | 100.0000 | 21.5739 | 578 | 1 | 578 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 87.8049 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.9182 | 99.9590 | 99.8774 | 49.7020 | 2438 | 1 | 2444 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9417 | 99.8834 | 100.0000 | 46.3975 | 857 | 1 | 863 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 97.0930 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8389 | 99.9596 | 99.7185 | 33.2528 | 2477 | 1 | 2480 | 7 | 3 | 42.8571 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I1_5 | func_cds | * | 99.4429 | 99.4444 | 99.4413 | 30.0781 | 179 | 1 | 178 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | func_cds | het | 98.3329 | 98.3051 | 98.3607 | 39.0000 | 58 | 1 | 60 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7494 | 99.5000 | 98.0100 | 56.6810 | 199 | 1 | 197 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7899 | 99.7908 | 99.7890 | 71.4801 | 477 | 1 | 473 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6636 | 99.8179 | 99.5098 | 78.3746 | 548 | 1 | 609 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8553 | 99.7110 | 100.0000 | 75.3957 | 345 | 1 | 342 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 94.1176 | 0.0000 | 0.0000 | 16 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 90.0000 | 0.0000 | 0.0000 | 9 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5775 | 97.7273 | 95.4545 | 93.6232 | 43 | 1 | 42 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7269 | 97.8261 | 95.6522 | 94.5691 | 45 | 1 | 44 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | func_cds | * | 97.7008 | 97.6744 | 97.7273 | 35.2941 | 42 | 1 | 43 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 3 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.4891 | 88.8889 | 98.5915 | 57.4850 | 8 | 1 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7336 | 98.3871 | 99.0826 | 83.5347 | 61 | 1 | 108 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8506 | 99.5370 | 98.1735 | 65.0160 | 215 | 1 | 215 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 99.5781 | 0.0000 | 0.0000 | 236 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1453 | 98.3051 | 100.0000 | 59.3103 | 58 | 1 | 59 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 63.6364 | 12 | 1 | 12 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 88.0435 | 11 | 1 | 11 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 85.2018 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.9565 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 87.5000 | 0.0000 | 0.0000 | 7 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | hetalt | 0.0000 | 97.7778 | 0.0000 | 0.0000 | 44 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | segdup | homalt | 98.9247 | 97.8723 | 100.0000 | 91.9561 | 46 | 1 | 44 | 0 | 0 | ||