PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46851-46900 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 81.6667 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.5174 | 7 | 1 | 7 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.8372 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.9905 | 9 | 1 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9316 | 5 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | func_cds | * | 99.5516 | 99.7753 | 99.3289 | 89.8846 | 444 | 1 | 444 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9899 | 2 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 82.3529 | 5 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9300 | 99.9299 | 99.9300 | 23.7460 | 1426 | 1 | 1428 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 93.2584 | 7 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 76.7857 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9363 | 99.8728 | 100.0000 | 62.0276 | 785 | 1 | 824 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.6667 | 5 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 81.8182 | 90.0000 | 75.0000 | 99.2945 | 9 | 1 | 9 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8873 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | * | * | 90.0000 | 100.0000 | 9 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | C1_5 | * | het | 0.0000 | 88.8889 | 0.0000 | 0.0000 | 8 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | homalt | 7.6994 | 87.5000 | 4.0268 | 56.6860 | 7 | 1 | 6 | 143 | 142 | 99.3007 | |
| mlin-fermikit | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 75.8621 | 7 | 1 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.9286 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.8909 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 93.3333 | 35.8974 | 93.7898 | 14 | 1 | 14 | 25 | 7 | 28.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 52.6316 | 93.7500 | 36.5854 | 94.4142 | 15 | 1 | 15 | 26 | 7 | 26.9231 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 51.7241 | 93.7500 | 35.7143 | 94.3396 | 15 | 1 | 15 | 27 | 8 | 29.6296 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 75.0000 | 75.0000 | 75.0000 | 80.9524 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 75.0000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |