PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46701-46750 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 88.4157 | 59 | 1 | 68 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2736 | 99.5192 | 99.0291 | 72.9659 | 207 | 1 | 204 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1110 | 99.1228 | 99.0991 | 78.8571 | 113 | 1 | 110 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7627 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7983 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2481 | 98.5075 | 100.0000 | 83.5476 | 66 | 1 | 64 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.8506 | 97.7273 | 100.0000 | 91.7625 | 43 | 1 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 98.8764 | 97.7778 | 100.0000 | 93.0599 | 44 | 1 | 44 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 98.9011 | 97.8261 | 100.0000 | 93.1087 | 45 | 1 | 45 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 33.3333 | 42 | 1 | 42 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.8571 | 3 | 1 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 64.9682 | 51 | 1 | 55 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.9796 | 97.9592 | 98.0000 | 77.3756 | 48 | 1 | 49 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | HG002complexvar | hetalt | 99.0410 | 99.6774 | 98.4127 | 37.6238 | 309 | 1 | 310 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 76.7857 | 12 | 1 | 13 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 94.9640 | 8 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.8506 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5739 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 97.3333 | 24 | 1 | 24 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.5124 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9757 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 98.0469 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | hetalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.4938 | 32 | 1 | 32 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9209 | 3 | 1 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.0581 | 98.0769 | 98.0392 | 78.7500 | 51 | 1 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.7778 | 95.6522 | 100.0000 | 79.0476 | 22 | 1 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 75.0000 | 60.0000 | 80.0000 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.5455 | 96.2963 | 92.8571 | 91.5152 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.5455 | 96.2963 | 92.8571 | 92.3077 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |