PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
4601-4650 / 86044 show all
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.1674
0.0000
0.0000
21193000
gduggal-snapfbSNP*map_l150_m1_e0*
96.2111
96.1025
96.3199
76.8067
294161193294191124527
46.8861
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
59.8797
85.7519
46.0008
48.3317
71741192716684127803
92.7603
gduggal-snapfbSNP*map_l100_m0_e0*
96.4309
96.3734
96.4883
71.4997
316501191316531152513
44.5312
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.7234
65.8935
89.0004
54.7661
230111912306285284
99.6491
hfeng-pmm2INDEL*HG002complexvar*
99.1003
98.4520
99.7572
57.3339
75747119175614184143
77.7174
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1302
92.8764
99.6203
36.5800
155151190157436060
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1302
92.8764
99.6203
36.5800
155151190157436060
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7763
96.4226
95.1386
69.4450
3204711893201716361576
96.3325
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
94.5490
94.0187
95.0853
75.2577
18674118818786971814
83.8311
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.5858
0.0000
0.0000
71188000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.5858
0.0000
0.0000
71188000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
92.7620
87.2242
99.0507
45.1542
8104118727132626
100.0000
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
92.7620
87.2242
99.0507
45.1542
8104118727132626
100.0000
qzeng-customSNPtimap_l250_m2_e1het
74.8760
64.0800
90.0468
96.4938
211411852117234196
83.7607
jpowers-varprowlSNPtiHG002compoundhet*
92.4932
93.2258
91.7721
42.7151
162941184163961470904
61.4966
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
79.2334
93.9527
68.5015
74.7853
183951184186428572188
2.1932
ciseli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
79.2334
93.9527
68.5015
74.7853
183951184186428572188
2.1932
qzeng-customSNPtimap_l150_m0_e0homalt
72.5105
57.1894
99.0446
79.2025
1579118215551515
100.0000
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
62.4770
93.3666
46.9454
60.6415
166371182166601882818130
96.2928
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
53.5889
45.7759
64.6178
56.5306
997118120711134332
29.2769
anovak-vgSNPtvmap_l100_m1_e0het
79.8335
92.3396
70.3109
72.6600
1423611811422660071268
21.1087
mlin-fermikitSNP*map_l250_m0_e0het
35.3963
21.6467
97.0238
84.3210
3261180326101
10.0000
gduggal-bwavardSNPtvmap_siren*
96.6959
97.4309
95.9719
67.9885
447501180445301869157
8.4002
gduggal-bwavardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.2538
0.0000
0.0000
31179000
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
79.5052
66.5627
98.6958
53.7549
2347117923463128
90.3226
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.5052
66.5627
98.6958
53.7549
2347117923463128
90.3226
gduggal-snapvardSNP*map_l150_m2_e1*
92.4051
96.3396
88.7794
82.5294
310311179306283871287
7.4141
ndellapenna-hhgaSNP*map_siren*
99.5283
99.1937
99.8651
53.0102
145049117914505119689
45.4082
gduggal-bwaplatINDEL*map_l100_m2_e0*
80.6607
68.1018
98.8989
92.5303
2515117825152811
39.2857
gduggal-bwafbINDELI16_PLUS*hetalt
59.7317
43.8513
93.6441
57.0909
92011782211515
100.0000
gduggal-bwaplatSNPtimap_l250_m2_e0homalt
49.2891
32.7044
100.0000
95.1810
572117757100
qzeng-customSNPtimap_l250_m2_e0het
74.6630
63.8291
89.9265
96.4842
207711772080233195
83.6910
ckim-isaacINDELI1_5HG002complexvarhomalt
94.8874
91.2478
98.8294
44.5077
1227111771224214545
31.0345
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
70.7753
78.9709
64.1209
53.4898
44201177861448204189
86.9087
gduggal-bwafbINDELI16_PLUSHG002compoundhethetalt
60.2626
43.8127
96.4912
42.7136
917117622088
100.0000
gduggal-bwaplatINDEL*HG002complexvarhetalt
79.9153
68.2076
96.4751
78.0617
2523117625189288
95.6522
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8454
39.1619
49.8013
62.4191
7571176752758719
94.8549
egarrison-hhgaINDELD16_PLUSHG002compoundhet*
61.7860
49.7651
81.4641
41.2623
116511761213276256
92.7536
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.5922
0.0000
0.0000
71175000
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1935
96.8999
97.4889
57.0530
36727117536532941927
98.5122
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.5922
0.0000
0.0000
71175000
jpowers-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.8814
39.9386
78.2347
54.0553
7801173780217203
93.5484
jlack-gatkINDELI6_15**
96.1308
95.2745
97.0025
53.1865
23650117323656731625
85.4993
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.8148
39.9386
77.9441
54.2466
7801173781221203
91.8552
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.1875
96.2685
98.1242
59.9927
30236117230236578510
88.2353
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.1875
96.2685
98.1242
59.9927
30236117230236578510
88.2353