PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
4551-4600 / 86044 show all
hfeng-pmm3SNPti**
99.9596
99.9417
99.9775
17.0194
20842951216208423646946
9.8081
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4475
97.1963
97.6999
61.5897
42120121541925987925
93.7183
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.6448
97.1963
98.0976
61.8032
42120121541922813755
92.8659
ciseli-customSNPtimap_l250_m1_e0het
63.3134
59.0633
68.2225
93.3005
17531215175481720
2.4480
egarrison-hhgaINDEL**homalt
98.9696
99.0301
98.9091
55.3233
12395812141239391367838
61.3021
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.9844
91.6684
94.3387
81.8623
13357121413181791134
16.9406
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.9844
91.6684
94.3387
81.8623
13357121413181791134
16.9406
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
69.0799
55.3552
91.8541
94.6607
15041213151113431
23.1343
gduggal-snapplatINDEL*map_sirenhet
79.1743
73.0923
86.3603
90.4763
32951213355256154
9.6257
jli-customSNP***
99.9382
99.9603
99.9160
18.2994
3053407121230533022566212
8.2619
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
95.9739
92.7447
99.4362
52.4133
154931212158729088
97.7778
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
95.9739
92.7447
99.4362
52.4133
154931212158729088
97.7778
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.1116
70.1992
90.6162
65.8002
285512122897300268
89.3333
anovak-vgINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
48.9231
45.1335
53.4074
60.1656
99712121105964732
75.9336
gduggal-snapplatSNPtvmap_l150_m2_e0*
92.0132
89.3351
94.8569
86.0094
10144121110144550292
53.0909
qzeng-customSNPtvmap_l150_m1_e0homalt
81.4702
69.3107
98.8039
71.2754
2735121127263333
100.0000
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
77.7513
65.3494
95.9630
64.1921
2282121022829629
30.2083
gduggal-bwavardINDELI6_15HG002complexvarhetalt
0.0000
1.0630
0.0000
0.0000
131210000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.2099
96.3623
73.2167
70.3492
320261209478611750814830
84.7041
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
50.4391
35.8961
84.7921
83.3242
677120977513923
16.5468
asubramanian-gatkINDEL*HG002complexvar*
98.8559
98.4299
99.2857
62.5855
75730120875611544244
44.8529
gduggal-snapfbSNPtv*het
98.4503
99.7960
97.1404
29.1063
590497120759083917393571
3.2829
jpowers-varprowlINDELI6_15HG002complexvarhetalt
0.0000
1.3083
0.0000
0.0000
161207000
anovak-vgSNPtvmap_l100_m2_e1het
80.1681
92.4332
70.7766
74.1911
1473212061471860771278
21.0301
cchapple-customSNPtv**
99.7746
99.8756
99.6738
23.8746
96848412069676373167250
7.8939
ltrigg-rtg2SNP*HG002complexvarhet
99.8358
99.7414
99.9305
18.3888
464296120446451532394
29.1022
gduggal-snapfbSNP*map_l150_m2_e1*
96.3459
96.2620
96.4300
78.3975
310061204310091148531
46.2544
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
80.7906
68.5669
98.3181
40.6653
2622120228064841
85.4167
ciseli-customINDELI6_15HG002complexvarhetalt
0.0000
1.7171
0.0000
0.0000
211202000
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
55.0422
49.2827
62.3260
55.4966
116812021254758535
70.5805
qzeng-customSNPtvmap_l125_m0_e0het
81.8738
72.6880
93.7170
91.2462
319912023192214178
83.1776
ciseli-customINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
4.0735
0.0000
0.0000
511201000
ghariani-varprowlINDELI6_15HG002complexvarhetalt
0.0000
1.7989
0.0000
0.0000
221201000
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
57.1959
83.7351
43.4309
41.9942
61831201621880998063
99.5555
anovak-vgSNPtvmap_l100_m2_e0het
80.0810
92.3877
70.6676
74.1753
1457612011456660461273
21.0552
ckim-isaacINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.0619
94.5157
99.7491
65.9214
206981201206775234
65.3846
ckim-isaacSNPtvHG002compoundhethet
84.5719
74.3206
98.1038
53.1755
3473120037257217
23.6111
gduggal-snapplatSNPtvmap_l150_m1_e0*
91.7958
89.0029
94.7697
85.0160
971212009712536286
53.3582
gduggal-snapfbSNP*map_l150_m2_e0*
96.3250
96.2326
96.4176
78.3427
306521200306551139529
46.4442
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
80.0966
67.4532
98.5731
65.2719
2487120024873621
58.3333
anovak-vgINDELI6_15*homalt
61.4755
80.7661
49.6232
33.6435
50391200520252814685
88.7143
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
40.7441
38.0238
43.8836
68.6231
7351198739945935
98.9418
gduggal-bwaplatINDEL*map_l100_m2_e1*
80.6558
68.1044
98.8790
92.5655
2558119825582911
37.9310
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
62.1202
49.4937
83.3957
63.4400
117311971115222150
67.5676
jli-customINDELI1_5**
99.4941
99.2055
99.7844
57.0293
1494671197149502323257
79.5666
cchapple-customINDEL*HG002complexvar*
98.8567
98.4455
99.2713
55.5354
75742119678742578462
79.9308
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
46.0973
30.8671
90.9962
43.3225
53411964754719
40.4255
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
88.8708
82.4960
96.3134
28.0265
5632119516726439
60.9375
gduggal-bwaplatSNPtimap_l250_m2_e1homalt
49.1915
32.6185
100.0000
95.2072
578119457700
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
69.8019
55.0659
95.3064
79.2366
1462119314627230
41.6667