PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44351-44400 / 86044 show all | |||||||||||||||
| astatham-gatk | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 87.8049 | 5 | 1 | 5 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9417 | 99.8834 | 100.0000 | 46.5044 | 857 | 1 | 857 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8510 | 15 | 1 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 94.7368 | 90.0000 | 100.0000 | 98.2857 | 9 | 1 | 9 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.0000 | 56 | 1 | 56 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.9045 | 99.8092 | 100.0000 | 64.2026 | 523 | 1 | 523 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 82.3529 | 12 | 1 | 12 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.8699 | 40 | 1 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 98.0392 | 96.1538 | 100.0000 | 96.8153 | 25 | 1 | 25 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 96.9697 | 94.1176 | 100.0000 | 97.2835 | 16 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3671 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.1579 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| astatham-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 69.9248 | 40 | 1 | 40 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 72.2973 | 41 | 1 | 41 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 71.8121 | 42 | 1 | 42 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 71.0000 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 75.6303 | 29 | 1 | 29 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 75.9494 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 79.5699 | 19 | 1 | 19 | 0 | 0 | ||
| astatham-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8973 | 15 | 1 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.7031 | 10 | 1 | 11 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.4026 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8723 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.9239 | 5 | 1 | 6 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.6585 | 38 | 1 | 38 | 0 | 0 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 75.5627 | 2 | 1 | 0 | 304 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 75.7212 | 2 | 1 | 0 | 202 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 76.4158 | 0 | 1 | 0 | 304 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 77.9412 | 0 | 1 | 0 | 195 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 76.4158 | 0 | 1 | 0 | 304 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 77.9412 | 0 | 1 | 0 | 195 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 74.2690 | 0 | 1 | 0 | 88 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.6410 | 0 | 1 | 0 | 57 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.8728 | 90.9091 | 92.8571 | 84.4444 | 10 | 1 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1923 | 94.7368 | 95.6522 | 72.2892 | 18 | 1 | 22 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 45.8333 | 11 | 1 | 13 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 94.2029 | 8 | 1 | 8 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.2381 | 90.9091 | 100.0000 | 84.8837 | 10 | 1 | 13 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 81.3651 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |