PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43951-44000 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.4783 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 97.1138 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 96.5675 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 97.3464 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 96.7803 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 96.8401 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 97.9079 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 57.1429 | 66.6667 | 50.0000 | 97.7528 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 97.9933 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 57.1429 | 66.6667 | 50.0000 | 98.1900 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 98.0198 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 57.1429 | 66.6667 | 50.0000 | 98.2222 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_siren | homalt | 91.6667 | 97.0588 | 86.8421 | 94.1267 | 33 | 1 | 33 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 80.0000 | 99.6564 | 66.8203 | 87.9210 | 290 | 1 | 290 | 144 | 143 | 99.3056 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5138 | 99.8915 | 99.1389 | 78.0222 | 921 | 1 | 921 | 8 | 3 | 37.5000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8120 | 99.9059 | 99.7183 | 81.3713 | 1062 | 1 | 1062 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2973 | 97.2973 | 97.2973 | 87.8289 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.4924 | 99.4924 | 99.4924 | 60.6000 | 196 | 1 | 196 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.8188 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.7447 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 95.8333 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3684 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.6562 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.3282 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 96.1513 | 110 | 1 | 110 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 96.2930 | 120 | 1 | 120 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 96.3415 | 121 | 1 | 121 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.2473 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 62.6263 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 89.5631 | 43 | 1 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 98.8506 | 97.7273 | 100.0000 | 90.5286 | 43 | 1 | 43 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 97.7778 | 97.7778 | 97.7778 | 90.3433 | 44 | 1 | 44 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.6258 | 113 | 1 | 113 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 89.3142 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 94.5691 | 43 | 1 | 43 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 95.4457 | 44 | 1 | 44 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 95.5140 | 45 | 1 | 45 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | segdup | homalt | 99.4731 | 99.7886 | 99.1597 | 92.9261 | 472 | 1 | 472 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 36.3636 | 42 | 1 | 42 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 92.3077 | 100.0000 | 58.6207 | 12 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.6522 | 91.6667 | 100.0000 | 29.4118 | 11 | 1 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 86.5854 | 11 | 1 | 11 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 97.6744 | 95.4545 | 100.0000 | 82.7869 | 21 | 1 | 21 | 0 | 0 | ||