PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43801-43850 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4465 | 99.8148 | 99.0809 | 82.3434 | 539 | 1 | 539 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.2609 | 99.1228 | 97.4138 | 85.9564 | 113 | 1 | 113 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 83.5088 | 326 | 1 | 326 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 84.7216 | 340 | 1 | 340 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4186 | 99.7085 | 99.1304 | 84.9608 | 342 | 1 | 342 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.0801 | 197 | 1 | 197 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0244 | 99.5098 | 98.5437 | 88.6501 | 203 | 1 | 203 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.3396 | 43 | 1 | 43 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0749 | 44 | 1 | 44 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.1093 | 45 | 1 | 45 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | HG002complexvar | homalt | 98.5378 | 99.9176 | 97.1955 | 55.8074 | 1213 | 1 | 1213 | 35 | 35 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 38.5714 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5725 | 99.8788 | 95.3704 | 71.8658 | 824 | 1 | 824 | 40 | 38 | 95.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 99.4083 | 98.8235 | 100.0000 | 57.0707 | 84 | 1 | 85 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.5725 | 99.8788 | 95.3704 | 71.8658 | 824 | 1 | 824 | 40 | 38 | 95.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.3333 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 85.9091 | 61 | 1 | 62 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 91.1765 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 91.2698 | 11 | 1 | 11 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9655 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2439 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.6237 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 86.7925 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.1034 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.0625 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 93.9130 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 89.3939 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 94.1423 | 14 | 1 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.6048 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 96.0000 | 3 | 1 | 3 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.1039 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 96.5517 | 6 | 1 | 6 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 96.1749 | 7 | 1 | 7 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.2248 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.9167 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.6852 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9592 | 2 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7578 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0769 | 2 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_siren | homalt | 97.2678 | 98.8889 | 95.6989 | 85.6703 | 89 | 1 | 89 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I6_15 | segdup | het | 99.3939 | 98.7952 | 100.0000 | 93.9394 | 82 | 1 | 82 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8851 | 44 | 1 | 44 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 83.0986 | 12 | 1 | 12 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7941 | 99.9742 | 99.6146 | 59.9671 | 3877 | 1 | 3877 | 15 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6801 | 99.9599 | 99.4019 | 61.3678 | 2493 | 1 | 2493 | 15 | 0 | 0.0000 | |