PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 863 864 865 866 867 868 869 870 871 ... 1720 1721 » 43301-43350 / 86044 show all
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.6807	99.5745	99.7872	69.0789	468	2	469	1	1	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6795	99.3610	100.0000	35.3430	311	2	311	0	0
dgrover-gatk	INDEL	I1_5	map_l100_m1_e0	hetalt	97.6744	95.4545	100.0000	88.7701	42	2	42	0	0
dgrover-gatk	INDEL	I1_5	map_l100_m2_e0	hetalt	97.6744	95.4545	100.0000	89.6552	42	2	42	0	0
dgrover-gatk	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.6135	43	2	43	0	0
dgrover-gatk	INDEL	I1_5	segdup	hetalt	97.8723	95.8333	100.0000	96.0963	46	2	47	0	0
dgrover-gatk	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8776	471	2	471	2	2	100.0000
dgrover-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3777	175	2	175	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.6744	95.4545	100.0000	75.7225	42	2	42	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7602	99.5215	100.0000	47.3418	416	2	416	0	0
dgrover-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	61.2378	120	2	119	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m0_e0	het	90.9091	88.2353	93.7500	93.6255	15	2	15	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l100_m1_e0	hetalt	95.2381	90.9091	100.0000	81.8182	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e0	hetalt	95.2381	90.9091	100.0000	83.6066	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l100_m2_e1	hetalt	95.2381	90.9091	100.0000	84.1270	20	2	20	0	0
dgrover-gatk	INDEL	I6_15	map_l125_m0_e0	het	82.3529	77.7778	87.5000	95.8974	7	2	7	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m0_e0	*	80.0000	75.0000	85.7143	97.2332	6	2	6	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m1_e0	het	89.6552	86.6667	92.8571	95.5128	13	2	13	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m2_e0	het	89.6552	86.6667	92.8571	95.9064	13	2	13	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m2_e1	het	90.3226	87.5000	93.3333	95.7386	14	2	14	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l250_m1_e0	*	76.9231	71.4286	83.3333	97.9798	5	2	5	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l250_m2_e0	*	80.0000	75.0000	85.7143	97.8852	6	2	6	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l250_m2_e1	*	80.0000	75.0000	85.7143	97.9769	6	2	6	1	1	100.0000
dgrover-gatk	INDEL	I6_15	segdup	*	99.4253	98.8571	100.0000	92.8894	173	2	173	0	0
dgrover-gatk	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9556	99.9112	100.0000	51.6129	2250	2	2250	0	0
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	97.5610	95.2381	100.0000	97.3788	40	2	40	0	0
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	het	96.1538	92.5926	100.0000	97.8411	25	2	25	0	0
dgrover-gatk	SNP	*	map_siren	hetalt	98.7500	97.5309	100.0000	70.3008	79	2	79	0	0
dgrover-gatk	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	51.9231	75	2	75	0	0
dgrover-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	41.2361	580	2	580	0	0
dgrover-gatk	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	35.9375	205	2	205	0	0
dgrover-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.2372	577	2	577	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.1014	1464	2	1464	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5839	99.7222	99.4460	87.8981	718	2	718	4	4	100.0000
dgrover-gatk	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	36.3636	308	2	308	0	0
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9275	99.9275	99.9275	36.3783	2756	2	2756	2	2	100.0000
dgrover-gatk	SNP	tv	map_siren	hetalt	98.7500	97.5309	100.0000	70.3008	79	2	79	0	0
dgrover-gatk	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.5365	3236	2	3236	6	6	100.0000
dgrover-gatk	SNP	tv	tech_badpromoters	*	97.9021	97.2222	98.5915	53.8961	70	2	70	1	1	100.0000
egarrison-hhga	INDEL	*	decoy	*	88.8889	80.0000	100.0000	99.9914	8	2	8	0	0
egarrison-hhga	INDEL	*	func_cds	*	99.4388	99.5506	99.3274	89.6520	443	2	443	3	0	0.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	66.6667	50.0000	100.0000	99.8337	2	2	2	0	0
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	80.8511	90.4762	73.0769	99.9443	19	2	19	7	6	85.7143
egarrison-hhga	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*		33.3333		100.0000	1	2	0	0	0
egarrison-hhga	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het		33.3333		100.0000	1	2	0	0	0
egarrison-hhga	INDEL	D16_PLUS	HG002compoundhet	homalt	16.0000	75.0000	8.9552	46.8254	6	2	6	61	52	85.2459
egarrison-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	2	0	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	2	0	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.0758	99.2593	98.8930	58.8771	268	2	268	3	3	100.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge