PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 858 859 860 861 862 863 864 865 866 ... 1720 1721 » 43051-43100 / 86044 show all
ckim-isaac	INDEL	I16_PLUS	map_l100_m0_e0	homalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	map_l125_m0_e0	homalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	map_l150_m0_e0	het		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	map_l150_m1_e0	hetalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	map_l150_m2_e0	hetalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	map_l150_m2_e1	hetalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I16_PLUS	segdup	homalt	94.4444	89.4737	100.0000	81.5217	17	2	17	0	0
ckim-isaac	INDEL	I16_PLUS	tech_badpromoters	homalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I1_5	map_l125_m1_e0	hetalt	90.9091	88.2353	93.7500	90.8571	15	2	15	1	1	100.0000
ckim-isaac	INDEL	I1_5	map_l150_m1_e0	hetalt	87.5000	77.7778	100.0000	94.8905	7	2	7	0	0
ckim-isaac	INDEL	I1_5	map_l150_m2_e0	hetalt	87.5000	77.7778	100.0000	95.4839	7	2	7	0	0
ckim-isaac	INDEL	I1_5	map_l150_m2_e1	hetalt	88.8889	80.0000	100.0000	95.0617	8	2	8	0	0
ckim-isaac	INDEL	I1_5	tech_badpromoters	*	95.2381	90.9091	100.0000	51.2195	20	2	20	0	0
ckim-isaac	INDEL	I1_5	tech_badpromoters	homalt	91.6667	84.6154	100.0000	54.1667	11	2	11	0	0
ckim-isaac	INDEL	I6_15	func_cds	hetalt	66.6667	50.0000	100.0000	33.3333	2	2	2	0	0
ckim-isaac	INDEL	I6_15	func_cds	homalt	92.8571	86.6667	100.0000	31.5789	13	2	13	0	0
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2908	99.7807	98.8056	70.5939	910	2	910	11	8	72.7273
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	58.4810	491	2	491	1	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.6165	99.2278	94.1392	60.2041	257	2	257	16	15	93.7500
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.4848	99.7211	97.2789	61.7387	715	2	715	20	19	95.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7712	99.6205	94.0803	83.0466	525	2	445	28	26	92.8571
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8792	99.4987	98.2673	65.6463	397	2	397	7	5	71.4286
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	95.1278	98.7805	91.7355	88.1139	162	2	111	10	8	80.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	77.4194	75.0000	80.0000	92.1875	6	2	4	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	map_l100_m0_e0	*	89.6552	92.8571	86.6667	97.1910	26	2	26	4	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	map_l100_m1_e0	het	88.7014	95.6522	82.6923	96.3989	44	2	43	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_l100_m2_e0	het	88.9670	95.8333	83.0189	96.8187	46	2	44	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_l100_m2_e1	het	89.5935	96.0784	83.9286	96.7136	49	2	47	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_siren	het	92.4513	97.4359	87.9518	96.3127	76	2	73	10	2	20.0000
ckim-vqsr	INDEL	D16_PLUS	segdup	*	91.8033	96.5517	87.5000	96.9711	56	2	56	8	2	25.0000
ckim-vqsr	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	92.8000	7	2	9	0	0
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	81.3717	1061	2	1061	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	95.8904	94.5946	97.2222	86.4151	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.7426	69	2	69	43	43	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9182	99.9454	99.8909	51.3011	3664	2	3664	4	4	100.0000
ckim-vqsr	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
ckim-vqsr	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.2647	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.3902	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6336	50	2	51	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3615	99.8976	96.8719	41.6063	1951	2	1951	63	62	98.4127
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	60.8696	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D6_15	map_l100_m1_e0	homalt	98.4127	96.8750	100.0000	86.9748	62	2	62	0	0
ckim-vqsr	INDEL	D6_15	map_l100_m2_e0	homalt	98.4375	96.9231	100.0000	87.4251	63	2	63	0	0
ckim-vqsr	INDEL	D6_15	map_l100_m2_e1	homalt	98.4848	97.0149	100.0000	87.3294	65	2	65	0	0
ckim-vqsr	INDEL	D6_15	map_l125_m2_e1	hetalt	94.7368	90.0000	100.0000	88.0000	18	2	18	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge