PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42701-42750 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.7619 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 92.4138 | 22 | 2 | 22 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 90.5564 | 124 | 2 | 124 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 82.2917 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 84.5455 | 17 | 2 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | het | 96.5035 | 97.1831 | 95.8333 | 92.9550 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 91.8919 | 24 | 2 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 92.1687 | 26 | 2 | 26 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 90.9091 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.4286 | 93.1034 | 100.0000 | 92.0354 | 27 | 2 | 27 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 97.0690 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 96.9208 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 97.0213 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 96.0338 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | het | 95.7890 | 95.7447 | 95.8333 | 94.6309 | 45 | 2 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.3077 | 25 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 90.8276 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.7087 | 45 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4012 | 98.8095 | 100.0000 | 80.3121 | 166 | 2 | 164 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.4253 | 98.8571 | 100.0000 | 67.2285 | 173 | 2 | 175 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.5660 | 92.3077 | 88.8889 | 93.8215 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | * | 88.8889 | 92.3077 | 85.7143 | 94.7269 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | * | 88.8889 | 92.3077 | 85.7143 | 94.7955 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2414 | 99.9435 | 98.5491 | 72.6182 | 3535 | 2 | 3532 | 52 | 52 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.7906 | 99.7901 | 80.0042 | 953 | 2 | 951 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5150 | 99.6497 | 95.4698 | 67.0354 | 569 | 2 | 569 | 27 | 27 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7868 | 99.5745 | 100.0000 | 69.2913 | 468 | 2 | 468 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8333 | 92.0000 | 100.0000 | 65.1515 | 23 | 2 | 23 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 12.5000 | 21 | 2 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.3094 | 99.6937 | 95.0365 | 73.7548 | 651 | 2 | 651 | 34 | 34 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1501 | 98.8701 | 99.4318 | 73.9645 | 175 | 2 | 175 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3797 | 99.1736 | 99.5868 | 69.7500 | 240 | 2 | 241 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0392 | 96.1538 | 100.0000 | 59.8425 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3607 | 96.7742 | 100.0000 | 86.8534 | 60 | 2 | 61 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7602 | 99.5215 | 100.0000 | 47.5348 | 416 | 2 | 415 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m0_e0 | * | 95.3846 | 93.9394 | 96.8750 | 91.6449 | 31 | 2 | 31 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | het | 96.6102 | 96.6102 | 96.6102 | 89.1144 | 57 | 2 | 57 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 81.1321 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | het | 96.7213 | 96.7213 | 96.7213 | 89.9007 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 82.6087 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 90.1135 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.1933 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | het | 93.3333 | 93.3333 | 93.3333 | 92.0000 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |