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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 845 846 847 848 849 850 851 852 853 ... 1720 1721 » 42401-42450 / 86044 show all
gduggal-snapplat	INDEL	I16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	tech_badpromoters	het		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I16_PLUS	tech_badpromoters	homalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I1_5	func_cds	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het		0.0000	0.0000	90.3030	0	2	0	16	0	0.0000
gduggal-snapplat	INDEL	I1_5	map_l125_m0_e0	hetalt	50.0000	50.0000	50.0000	99.2958	2	2	1	1	1	100.0000
gduggal-snapplat	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	INDEL	I6_15	tech_badpromoters	homalt	50.0000	33.3333	100.0000	66.6667	1	2	1	0	0
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	86.6667	86.6667	86.6667	95.8564	13	2	13	2	1	50.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt		0.0000		100.0000	0	2	0	0	0
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	40.0000	33.3333	50.0000	98.1982	1	2	1	1	0	0.0000
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	86.6667	86.6667	86.6667	95.8564	13	2	13	2	1	50.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	95.1220	95.1220	95.1220	91.5638	39	2	39	2	1	50.0000
raldana-dualsentieon	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9452	99.9270	99.9635	30.8140	2736	2	2736	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l100_m1_e0	hetalt	96.2963	95.1220	97.5000	65.5172	39	2	39	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l100_m2_e0	hetalt	96.3855	95.2381	97.5610	68.4615	40	2	40	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l100_m2_e1	hetalt	96.4706	95.3488	97.6190	68.1818	41	2	41	1	1	100.0000
raldana-dualsentieon	SNP	*	map_l125_m1_e0	hetalt	96.5517	93.3333	100.0000	67.4419	28	2	28	0	0
raldana-dualsentieon	SNP	*	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	72.2772	28	2	28	0	0
raldana-dualsentieon	SNP	*	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
raldana-dualsentieon	SNP	*	map_l150_m1_e0	hetalt	94.7368	90.0000	100.0000	74.2857	18	2	18	0	0
raldana-dualsentieon	SNP	*	map_l150_m2_e0	hetalt	94.7368	90.0000	100.0000	77.2152	18	2	18	0	0
raldana-dualsentieon	SNP	*	map_l150_m2_e1	hetalt	94.7368	90.0000	100.0000	77.5000	18	2	18	0	0
raldana-dualsentieon	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	37.7278	580	2	580	1	1	100.0000
raldana-dualsentieon	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	34.5048	205	2	205	0	0
raldana-dualsentieon	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.4966	577	2	577	0	0
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6078	99.4778	99.7382	83.1048	381	2	381	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9111	99.8815	99.9407	63.6892	1686	2	1686	1	1	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	91.6667	33	2	33	0	0
raldana-dualsentieon	SNP	ti	tech_badpromoters	*	98.2249	97.6471	98.8095	42.8571	83	2	83	1	1	100.0000
raldana-dualsentieon	SNP	ti	tech_badpromoters	het	97.6744	95.4545	100.0000	44.7368	42	2	42	0	0
raldana-dualsentieon	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	63.0465	522	2	522	2	1	50.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	96.2963	95.1220	97.5000	91.1700	39	2	39	1	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9237	99.8474	100.0000	34.6480	1309	2	1309	0	0
raldana-dualsentieon	SNP	tv	map_l100_m1_e0	hetalt	96.2963	95.1220	97.5000	65.5172	39	2	39	1	1	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e0	hetalt	96.3855	95.2381	97.5610	68.4615	40	2	40	1	1	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	hetalt	96.4706	95.3488	97.6190	68.1818	41	2	41	1	1	100.0000
raldana-dualsentieon	SNP	tv	map_l125_m1_e0	hetalt	96.5517	93.3333	100.0000	67.4419	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	hetalt	96.5517	93.3333	100.0000	72.2772	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l125_m2_e1	hetalt	96.5517	93.3333	100.0000	72.5490	28	2	28	0	0
raldana-dualsentieon	SNP	tv	map_l150_m1_e0	hetalt	94.7368	90.0000	100.0000	74.2857	18	2	18	0	0
raldana-dualsentieon	SNP	tv	map_l150_m2_e0	hetalt	94.7368	90.0000	100.0000	77.2152	18	2	18	0	0
raldana-dualsentieon	SNP	tv	map_l150_m2_e1	hetalt	94.7368	90.0000	100.0000	77.5000	18	2	18	0	0
raldana-dualsentieon	SNP	tv	segdup	homalt	99.8765	99.9382	99.8149	89.2756	3236	2	3236	6	6	100.0000
raldana-dualsentieon	SNP	tv	tech_badpromoters	*	97.9021	97.2222	98.5915	49.6454	70	2	70	1	1	100.0000
rpoplin-dv42	INDEL	*	func_cds	homalt	99.3348	99.1150	99.5556	35.7143	224	2	224	1	1	100.0000
rpoplin-dv42	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	75.0000	60.0000	100.0000	99.7326	3	2	3	0	0
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	95.0000	90.4762	100.0000	99.9564	19	2	19	0	0

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