PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 843 844 845 846 847 848 849 850 851 ... 1720 1721 » 42301-42350 / 86044 show all
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l100_m0_e0	homalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l125_m0_e0	homalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l150_m0_e0	het		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l150_m1_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l150_m2_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	tech_badpromoters	het		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I16_PLUS	tech_badpromoters	homalt		0.0000	0.0000	0.0000	0	2	0	0	0
gduggal-snapfb	INDEL	I1_5	func_cds	het	93.5987	96.6102	90.7692	41.4414	57	2	59	6	1	16.6667
gduggal-snapfb	INDEL	I1_5	func_cds	homalt	99.1525	98.3193	100.0000	31.1765	117	2	117	0	0
gduggal-snapfb	INDEL	I1_5	map_l125_m0_e0	homalt	96.9508	98.2456	95.6897	91.9107	112	2	111	5	2	40.0000
gduggal-snapfb	INDEL	I1_5	map_l125_m1_e0	hetalt	83.1234	88.2353	78.5714	94.2857	15	2	11	3	1	33.3333
gduggal-snapfb	INDEL	I1_5	map_l150_m0_e0	homalt	97.7329	97.0149	98.4615	94.4869	65	2	64	1	1	100.0000
gduggal-snapfb	INDEL	I1_5	map_l250_m0_e0	*	93.6170	91.6667	95.6522	98.2642	22	2	22	1	1	100.0000
gduggal-snapfb	INDEL	I6_15	func_cds	hetalt	50.0000	50.0000	50.0000	33.3333	2	2	1	1	1	100.0000
ghariani-varprowl	INDEL	*	map_l250_m0_e0	het	76.1194	96.2264	62.9630	98.4033	51	2	51	30	3	10.0000
ghariani-varprowl	INDEL	*	tech_badpromoters	het	81.3187	94.8718	71.1538	54.3860	37	2	37	15	15	100.0000
ghariani-varprowl	INDEL	D16_PLUS	HG002compoundhet	homalt	16.0000	75.0000	8.9552	50.7353	6	2	6	61	57	93.4426
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	27.2727	75.0000	16.6667	61.7021	6	2	6	30	30	100.0000
ghariani-varprowl	INDEL	D16_PLUS	map_l150_m2_e1	*	84.2105	88.8889	80.0000	98.5735	16	2	16	4	1	25.0000
ghariani-varprowl	INDEL	D16_PLUS	map_l150_m2_e1	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	segdup	homalt	90.9091	83.3333	100.0000	93.6306	10	2	10	0	0
ghariani-varprowl	INDEL	D1_5	map_l150_m0_e0	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D1_5	map_l250_m0_e0	het	71.2644	93.9394	57.4074	97.8296	31	2	31	23	2	8.6957
ghariani-varprowl	INDEL	D1_5	map_l250_m0_e0	homalt	91.6667	84.6154	100.0000	97.3301	11	2	11	0	0
ghariani-varprowl	INDEL	D1_5	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D6_15	func_cds	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*	50.0000	50.0000	50.0000	98.5348	2	2	2	2	1	50.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	87.8646	98.7097	79.1667	84.0000	153	2	152	40	37	92.5000
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	het	77.2586	98.4127	63.5897	89.5161	124	2	124	71	65	91.5493
gduggal-snapplat	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	66.6667	66.6667	66.6667	88.4615	4	2	4	2	1	50.0000
gduggal-snapplat	SNP	ti	map_l100_m0_e0	hetalt	80.0000	85.7143	75.0000	81.3953	12	2	12	4	4	100.0000
gduggal-snapplat	SNP	ti	map_l100_m1_e0	hetalt	85.7143	93.1034	79.4118	79.6407	27	2	27	7	7	100.0000
gduggal-snapplat	SNP	ti	map_l100_m2_e0	hetalt	86.1538	93.3333	80.0000	81.7708	28	2	28	7	7	100.0000
gduggal-snapplat	SNP	ti	map_l100_m2_e1	hetalt	86.5672	93.5484	80.5556	81.3472	29	2	29	7	7	100.0000
gduggal-snapplat	SNP	ti	map_l125_m0_e0	hetalt	75.0000	75.0000	75.0000	87.3016	6	2	6	2	2	100.0000
gduggal-snapplat	SNP	ti	map_l125_m1_e0	hetalt	84.6154	91.6667	78.5714	78.4615	22	2	22	6	6	100.0000
gduggal-snapplat	SNP	ti	map_l125_m2_e0	hetalt	84.6154	91.6667	78.5714	81.9355	22	2	22	6	6	100.0000
gduggal-snapplat	SNP	ti	map_l125_m2_e1	hetalt	84.6154	91.6667	78.5714	81.9355	22	2	22	6	6	100.0000
gduggal-snapplat	SNP	ti	map_l150_m1_e0	hetalt	81.2500	86.6667	76.4706	83.4951	13	2	13	4	4	100.0000
gduggal-snapplat	SNP	ti	map_l150_m2_e0	hetalt	81.2500	86.6667	76.4706	85.8333	13	2	13	4	4	100.0000
gduggal-snapplat	SNP	ti	map_l150_m2_e1	hetalt	81.2500	86.6667	76.4706	85.8333	13	2	13	4	4	100.0000
gduggal-snapplat	SNP	ti	tech_badpromoters	het	93.3333	95.4545	91.3043	68.9189	42	2	42	4	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge