PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
42251-42300 / 86044 show all
gduggal-snapvardINDELI16_PLUSmap_l125_m0_e0homalt
0.0000
100.0000
02000
gduggal-snapvardINDELI16_PLUSmap_l150_m0_e0het
0.0000
0.0000
100.0000
93.9394
02200
gduggal-snapvardINDELI16_PLUSmap_l150_m1_e0hetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI16_PLUSmap_l150_m2_e0hetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI16_PLUSmap_l150_m2_e1hetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI16_PLUStech_badpromotershet
0.0000
0.0000
100.0000
50.0000
02100
gduggal-snapvardINDELI16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI1_5func_cdshetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardINDELI1_5map_l125_m0_e0hetalt
0.0000
50.0000
0.0000
0.0000
22000
gduggal-snapvardINDELI1_5map_l150_m0_e0het
85.2218
98.1132
75.3247
93.9718
10421745714
24.5614
gduggal-snapvardINDELI1_5map_l150_m0_e0hetalt
0.0000
33.3333
0.0000
0.0000
12000
gduggal-snapvardINDELI1_5map_l250_m0_e0het
70.5302
86.6667
59.4595
98.2596
13222153
20.0000
gduggal-snapvardINDELI1_5map_l250_m0_e0homalt
87.5000
77.7778
100.0000
95.1157
721900
gduggal-snapvardINDELI1_5map_l250_m1_e0het
79.7395
96.6667
67.8571
96.3721
582954512
26.6667
gduggal-snapvardINDELI1_5map_l250_m2_e0het
80.7151
96.9697
69.1275
96.5865
6421034612
26.0870
gduggal-snapvardINDELI1_5map_l250_m2_e1het
80.7151
96.9697
69.1275
96.6682
6421034612
26.0870
gduggal-snapvardINDELI6_15map_l100_m0_e0hetalt
0.0000
50.0000
0.0000
0.0000
22000
gduggal-snapvardINDELI6_15tech_badpromotershomalt
50.0000
33.3333
100.0000
0.0000
12100
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
33.3333
0.0000
0.0000
12000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200*
36.1290
77.7778
23.5294
96.8105
724130
0.0000
gduggal-snapvardSNP*lowcmp_SimpleRepeat_triTR_51to200het
29.7030
71.4286
18.7500
96.3218
523130
0.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_51to200*
37.5000
75.0000
25.0000
97.0516
62390
0.0000
gduggal-snapvardSNPtilowcmp_SimpleRepeat_triTR_51to200het
28.5714
66.6667
18.1818
96.6361
42290
0.0000
gduggal-snapvardSNPtisegduphetalt
0.0000
0.0000
0.0000
02000
gduggal-snapvardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
33.3333
0.0000
0.0000
12000
gduggal-snapfbINDELD16_PLUSdecoyhomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD16_PLUSmap_l125_m0_e0homalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD16_PLUSmap_l150_m2_e1hetalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD1_5func_cdshomalt
98.6301
97.2973
100.0000
28.7129
7227200
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
70.7469
84.6154
60.7843
57.8512
11231202
10.0000
gduggal-snapfbINDELD1_5tech_badpromoters*
91.8919
89.4737
94.4444
57.1429
1721711
100.0000
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
02000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
97.4684
22200
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
02000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
66.6667
66.6667
66.6667
99.8717
42422
100.0000
gduggal-snapfbINDELD6_15map_l125_m0_e0hetalt
66.6667
100.0000
42000
gduggal-snapfbINDELD6_15map_l150_m0_e0homalt
76.9231
71.4286
83.3333
96.2264
52511
100.0000
gduggal-snapfbINDELD6_15map_l150_m1_e0hetalt
85.7143
75.0000
100.0000
92.3077
62100
gduggal-snapfbINDELD6_15map_l150_m2_e0hetalt
85.7143
75.0000
100.0000
92.8571
62100
gduggal-snapfbINDELD6_15map_l250_m0_e0het
66.6667
50.0000
100.0000
96.4912
22200
gduggal-snapfbINDELD6_15map_l250_m1_e0hetalt
0.0000
100.0000
02000
gduggal-snapfbINDELD6_15map_l250_m1_e0homalt
66.6667
60.0000
75.0000
97.4684
32311
100.0000
gduggal-snapfbINDELD6_15map_l250_m2_e0hetalt
0.0000
100.0000
02000
gduggal-snapfbINDELD6_15map_l250_m2_e1hetalt
0.0000
100.0000
02000
gduggal-snapfbINDELI16_PLUSfunc_cdshomalt
0.0000
0.0000
0.0000
02000
gduggal-snapfbINDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200het
0.0000
0.0000
0.0000
02000