PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41601-41650 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7917 | 99.5842 | 100.0000 | 51.7737 | 479 | 2 | 503 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 74.0741 | 7 | 2 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 61.1111 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | homalt | 99.4792 | 98.9637 | 100.0000 | 91.0664 | 191 | 2 | 191 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 88.8889 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 86.9565 | 3 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | segdup | homalt | 99.6765 | 99.9382 | 99.4161 | 89.5171 | 3236 | 2 | 3235 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 66.6667 | 3 | 2 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 83.3333 | 76.9231 | 99.2709 | 10 | 2 | 10 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.9011 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.8406 | 90.4762 | 55.5556 | 99.9404 | 19 | 2 | 20 | 16 | 16 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 57.1429 | 50.0000 | 66.6667 | 87.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | * | 50.0000 | 50.0000 | 50.0000 | 95.7895 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m1_e0 | het | 33.3333 | 33.3333 | 33.3333 | 94.0000 | 1 | 2 | 1 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | * | 54.5455 | 60.0000 | 50.0000 | 95.0820 | 3 | 2 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e0 | het | 28.5714 | 33.3333 | 25.0000 | 94.0299 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | * | 54.5455 | 60.0000 | 50.0000 | 95.1613 | 3 | 2 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m2_e1 | het | 28.5714 | 33.3333 | 25.0000 | 94.2029 | 1 | 2 | 1 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.1379 | 6 | 2 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 81.4815 | 84.6154 | 78.5714 | 67.4419 | 11 | 2 | 11 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 97.5000 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8190 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 96.7890 | 9 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 97.0414 | 7 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | het | 91.8919 | 96.2264 | 87.9310 | 97.3827 | 51 | 2 | 51 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.4783 | 95.5556 | 91.4894 | 52.5253 | 43 | 2 | 43 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.9836 | 17 | 2 | 18 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 92.1622 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | het | 92.5373 | 93.9394 | 91.1765 | 96.9479 | 31 | 2 | 31 | 3 | 1 | 33.3333 | |