PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41501-41550 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 97.7099 | 96.9697 | 98.4615 | 96.5608 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.1059 | 96.1538 | 98.0769 | 54.3860 | 50 | 2 | 51 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.4359 | 96.6102 | 98.2759 | 58.5714 | 57 | 2 | 57 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 83.7398 | 20 | 2 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 85.6115 | 20 | 2 | 20 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 93.0233 | 90.9091 | 95.2381 | 85.5172 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.3138 | 6977 | 2 | 6977 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.2733 | 7 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.8377 | 5273 | 2 | 5273 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9113 | 99.8227 | 100.0000 | 54.1531 | 1126 | 2 | 1126 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8949 | 99.8598 | 99.9299 | 27.9657 | 1425 | 2 | 1426 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 95.4545 | 6 | 2 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 75.9259 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 83.7838 | 6 | 2 | 6 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6190 | 99.6190 | 99.6190 | 68.6754 | 523 | 2 | 523 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 86.5385 | 7 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.4545 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 33.3333 | 3 | 2 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6055 | 3 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5964 | 2 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | tech_badpromoters | het | 95.0546 | 94.8718 | 95.2381 | 45.4545 | 37 | 2 | 40 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 37.9310 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 48.7500 | 41 | 2 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.3214 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.0100 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 53.6585 | 91.6667 | 37.9310 | 51.2605 | 22 | 2 | 22 | 36 | 36 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 77.2727 | 10 | 2 | 10 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.4177 | 92.0000 | 88.8889 | 91.0596 | 23 | 2 | 24 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.8330 | 91.6667 | 92.0000 | 89.1775 | 22 | 2 | 23 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6930 | 94.2857 | 97.1429 | 83.7209 | 33 | 2 | 34 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.3250 | 96.7213 | 84.7222 | 88.5350 | 59 | 2 | 61 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.8710 | 95.1220 | 75.0000 | 87.3786 | 39 | 2 | 39 | 13 | 13 | 100.0000 | |