PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41351-41400 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 81.8182 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 57.1429 | 50.0000 | 66.6667 | 87.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 80.0000 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 81.4815 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 88.0357 | 58 | 2 | 67 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4441 | 98.6928 | 76.9001 | 45.2692 | 151 | 2 | 1032 | 310 | 290 | 93.5484 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | homalt | 47.0588 | 33.3333 | 80.0000 | 93.9759 | 1 | 2 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.5484 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | homalt | 47.6190 | 33.3333 | 83.3333 | 93.7500 | 1 | 2 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | * | 85.6287 | 84.6154 | 86.6667 | 46.4286 | 11 | 2 | 13 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8211 | 99.9112 | 99.7312 | 57.1511 | 2250 | 2 | 2226 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 96.9697 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | * | tech_badpromoters | homalt | 98.0970 | 97.5000 | 98.7013 | 46.1538 | 78 | 2 | 76 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.5294 | 97.1014 | 100.0000 | 91.7160 | 67 | 2 | 70 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 95.9184 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6872 | 99.5842 | 99.7904 | 53.5992 | 479 | 2 | 476 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | homalt | 96.0692 | 94.8718 | 97.2973 | 51.3158 | 37 | 2 | 36 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.3077 | 90.0000 | 94.7368 | 99.2146 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.1964 | 99.5935 | 96.8379 | 59.5200 | 490 | 2 | 490 | 16 | 15 | 93.7500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.9388 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 87.8378 | 9 | 2 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 2 | 2 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.4545 | 91.3043 | 100.0000 | 72.2222 | 21 | 2 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 75.0000 | 85.7143 | 78.7879 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.2655 | 92.5926 | 96.0000 | 88.3721 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.2655 | 92.5926 | 96.0000 | 89.7959 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0000 | 2 | 2 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 91.9332 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.7198 | 12 | 2 | 11 | 0 | 0 | ||