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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 817 818 819 820 821 822 823 824 825 ... 1720 1721 » 41001-41050 / 86044 show all
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.0000	96.0784	100.0000	26.0870	49	2	51	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	78.9474	75.0000	83.3333	90.9091	6	2	5	1	1	100.0000
jmaeng-gatk	INDEL	D16_PLUS	map_l100_m0_e0	*	85.2459	92.8571	78.7879	96.6734	26	2	26	7	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	map_l100_m1_e0	het	88.7014	95.6522	82.6923	96.1223	44	2	43	9	4	44.4444
jmaeng-gatk	INDEL	D16_PLUS	map_l100_m2_e0	het	88.9670	95.8333	83.0189	96.5762	46	2	44	9	4	44.4444
jmaeng-gatk	INDEL	D16_PLUS	map_l100_m2_e1	het	89.5935	96.0784	83.9286	96.4602	49	2	47	9	4	44.4444
jmaeng-gatk	INDEL	D16_PLUS	segdup	*	94.1176	96.5517	91.8033	97.0113	56	2	56	5	2	40.0000
jmaeng-gatk	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	92.8571	7	2	9	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.2248	99.2248	99.2248	63.9161	256	2	256	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	map_l150_m0_e0	homalt	98.2249	97.6471	98.8095	90.4328	83	2	83	1	1	100.0000
jmaeng-gatk	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.3151	1	2	1	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m1_e0	homalt	98.2143	96.4912	100.0000	94.4501	55	2	55	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.4286	1	2	1	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e0	homalt	98.3051	96.6667	100.0000	94.8763	58	2	58	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4444	1	2	1	0	0
jmaeng-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	98.3051	96.6667	100.0000	95.0129	58	2	58	0	0
jmaeng-gatk	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6596	50	2	51	0	0
jmaeng-gatk	INDEL	D6_15	HG002complexvar	homalt	99.3614	99.8289	98.8983	63.0673	1167	2	1167	13	12	92.3077
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6528	99.6528	99.6528	69.7320	574	2	574	2	2	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7284	99.9156	97.5690	55.8647	2368	2	2368	59	57	96.6102
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0619	99.2481	98.8764	82.8296	264	2	264	3	1	33.3333
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	61.2903	35	2	35	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	50.8083	848	2	848	4	4	100.0000
jmaeng-gatk	INDEL	D6_15	map_l125_m1_e0	het	96.1240	96.8750	95.3846	94.3674	62	2	62	3	1	33.3333
jmaeng-gatk	INDEL	D6_15	map_l125_m2_e1	hetalt	94.7368	90.0000	100.0000	87.7551	18	2	18	0	0
jmaeng-gatk	INDEL	D6_15	map_l150_m2_e1	*	97.6471	97.6471	97.6471	94.2490	83	2	83	2	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	76.1905	33	2	35	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	50.0000	50.0000	50.0000	85.1852	2	2	2	2	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	85.7143	2	2	2	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het		0.0000		100.0000	0	2	0	0	0
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m1_e0	*	92.3077	92.3077	92.3077	96.0606	24	2	24	2	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e0	*	90.5660	92.3077	88.8889	96.4380	24	2	24	3	0	0.0000
jmaeng-gatk	INDEL	I16_PLUS	map_l100_m2_e1	*	90.5660	92.3077	88.8889	96.4520	24	2	24	3	0	0.0000
jmaeng-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.9819	99.3921	58.9189	89.0727	327	2	327	228	227	99.5614
jmaeng-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5281	99.6497	97.4315	67.4470	569	2	569	15	15	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.2056	99.6454	98.7698	73.1350	562	2	562	7	7	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3458	99.8122	98.8837	68.5948	1063	2	1063	12	12	100.0000
jmaeng-gatk	INDEL	I1_5	map_l100_m1_e0	homalt	99.3263	99.6139	99.0403	80.7962	516	2	516	5	4	80.0000
jmaeng-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.3427	99.6234	99.0637	82.1345	529	2	529	5	4	80.0000
jmaeng-gatk	INDEL	I1_5	map_l100_m2_e1	homalt	99.3536	99.6296	99.0792	82.1733	538	2	538	5	4	80.0000
jmaeng-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.2366	99.3884	99.0854	83.4677	325	2	325	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	map_l125_m2_e0	homalt	99.2679	99.4135	99.1228	84.7048	339	2	339	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	map_l125_m2_e1	homalt	99.2722	99.4169	99.1279	84.8990	341	2	341	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	map_l150_m1_e0	homalt	98.7406	98.9899	98.4925	87.1030	196	2	196	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	map_l150_m2_e0	homalt	98.7593	99.0050	98.5149	88.5292	199	2	199	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	map_l150_m2_e1	homalt	98.7775	99.0196	98.5366	88.5921	202	2	202	3	2	66.6667
jmaeng-gatk	INDEL	I1_5	segdup	homalt	99.4720	99.5772	99.3671	92.8539	471	2	471	3	3	100.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.9376	99.7576	94.2726	71.9833	823	2	823	50	47	94.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.9376	99.7576	94.2726	71.9833	823	2	823	50	47	94.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het		77.7778		100.0000	7	2	0	0	0

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