PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40651-40700 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | * | HG002compoundhet | homalt | 72.9600 | 99.7085 | 57.5273 | 84.4270 | 684 | 2 | 684 | 505 | 502 | 99.4059 | |
| jli-custom | INDEL | * | func_cds | het | 99.2974 | 99.0654 | 99.5305 | 45.8015 | 212 | 2 | 212 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 90.1610 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m0_e0 | homalt | 93.8776 | 92.0000 | 95.8333 | 97.2603 | 23 | 2 | 23 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.9487 | 4 | 2 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 4 | 2 | 4 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3471 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | * | hetalt | 99.5989 | 99.7704 | 99.4279 | 53.2620 | 869 | 2 | 869 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | func_cds | * | 99.4763 | 99.9542 | 99.0029 | 37.0021 | 4369 | 2 | 4369 | 44 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | func_cds | het | 99.1412 | 99.9247 | 98.3698 | 41.4914 | 2655 | 2 | 2655 | 44 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7917 | 99.5842 | 100.0000 | 59.1297 | 479 | 2 | 479 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 38.6097 | 1309 | 2 | 1307 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9877 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | * | 80.0000 | 66.6667 | 100.0000 | 99.5614 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.7531 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.7447 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.6102 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.2381 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 96.9697 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 50.0000 | 100.0000 | 99.1632 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.4872 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.5495 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | * | 75.0000 | 60.0000 | 100.0000 | 98.8971 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 99.5575 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 83.3333 | 71.4286 | 100.0000 | 99.7405 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6139 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6587 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6656 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 66.6667 | 100.0000 | 99.7509 | 4 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.0000 | 90.4762 | 100.0000 | 54.7619 | 19 | 2 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 90.3226 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||