PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
4001-4050 / 86044 show all
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
37.1500
27.9605
55.3371
59.9550
5951533591477362
75.8910
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
89.5484
81.0747
100.0000
93.6170
65631532300
gduggal-snapplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.0000
0.0000
01530000
gduggal-snapplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.0000
0.0000
01530000
ckim-isaacSNPtimap_l250_m2_e0het
69.1244
53.0117
99.3092
92.1654
172515291725121
8.3333
qzeng-customINDEL**homalt
98.3570
98.7793
97.9383
51.6092
123644152812365526031560
59.9308
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
0.0000
0.1307
0.0000
0.0000
21528000
gduggal-snapfbINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
0.0000
0.1307
0.0000
0.0000
21528000
cchapple-customSNPtimap_siren*
98.4477
98.4784
98.4171
57.2072
988281527987961589367
23.0963
raldana-dualsentieonSNPti*het
99.9019
99.8809
99.9229
17.7757
12803641527128031398821
2.1255
gduggal-bwavardINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
46.9055
30.9190
97.1223
64.9698
68315266752018
90.0000
eyeh-varpipeINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
19.0780
10.6557
91.0204
63.7574
18215262232220
90.9091
mlin-fermikitSNP*map_l250_m2_e0homalt
52.9680
43.1869
68.4770
75.7965
116015261160534494
92.5094
anovak-vgSNPtvmap_l100_m0_e0*
81.2819
86.2414
76.8618
75.7478
9559152595472874784
27.2791
ckim-gatkSNPtvmap_l100_m0_e0homalt
75.2796
60.3744
99.9570
73.4271
23221524232210
0.0000
ltrigg-rtg2INDEL*HG002compoundhet*
96.7706
94.9266
98.6878
59.5666
28440152028503379309
81.5303
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
1.5317
0.7843
32.5163
68.9024
121518199413192
46.4891
gduggal-snapvardINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
1.5317
0.7843
32.5163
68.9024
121518199413192
46.4891
anovak-vgSNPtimap_l150_m1_e0homalt
88.1795
79.2821
99.3263
69.9803
5809151857503934
87.1795
gduggal-bwaplatSNP*map_l250_m0_e0*
44.7426
28.8993
99.0369
98.7610
617151861760
0.0000
jmaeng-gatkSNPtvmap_l100_m0_e0homalt
75.4210
60.5564
99.9571
72.3081
23291517232911
100.0000
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
39.4885
37.0800
42.2316
61.7642
89415178971227722
58.8427
anovak-vgINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
16.7947
0.0000
0.0000
3061516000
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1590
96.0055
98.3406
45.9292
36388151449009827740
89.4800
ckim-vqsrSNPtimap_l250_m2_e1het
69.7793
54.1376
98.1319
97.0902
178615131786340
0.0000
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.4376
86.6059
99.1115
59.3014
9783151398168822
25.0000
gduggal-snapplatINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
49.9128
37.3964
75.0227
61.0403
902151082627549
17.8182
ckim-isaacSNPtvmap_l250_m1_e0*
60.0000
42.9543
99.4751
90.6960
11371510113761
16.6667
ckim-isaacINDELD1_5HG002complexvarhet
94.5641
92.7330
96.4689
45.1790
19256150918687684323
47.2222
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
66.4676
77.4068
58.2374
31.9666
51701509769255164283
77.6468
hfeng-pmm3SNP*HG002complexvarhet
99.8290
99.6758
99.9825
18.2080
46398815094638598116
19.7531
anovak-vgINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
63.4822
58.5761
69.2853
62.7923
213115072249997694
69.6088
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_diTR_11to50het
84.9692
75.8339
96.6071
82.4013
47291507475516752
31.1377
dgrover-gatkINDEL*HG002compoundhet*
95.1627
94.9733
95.3528
63.3096
2845415062833613811370
99.2035
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
38.8587
37.6192
40.1826
50.2147
9071504158423581680
71.2468
gduggal-snapvardSNP*map_l100_m2_e1het
93.3754
96.7973
90.1872
78.6618
453961502448054875376
7.7128
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
28.9593
17.5631
82.4742
66.3778
32015023206851
75.0000
hfeng-pmm2INDEL**hetalt
96.9055
94.0484
99.9416
58.8044
237351502239541412
85.7143
hfeng-pmm1INDEL**hetalt
96.9096
94.0524
99.9458
58.8135
237361501239601312
92.3077
hfeng-pmm2INDEL*HG002compoundhethetalt
96.9221
94.0429
99.9832
52.1234
2368015002379542
50.0000
astatham-gatkINDEL**hetalt
96.8001
94.0563
99.7088
58.1664
237371500239687069
98.5714
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
82.2424
75.3576
90.5117
53.1553
458414995590586545
93.0034
qzeng-customINDELD6_15*hetalt
81.6614
100.0000
66751499000
hfeng-pmm1INDEL*HG002compoundhethetalt
96.9242
94.0469
99.9832
52.2156
2368114992379643
75.0000
gduggal-snapvardSNP*map_l100_m2_e0het
93.3360
96.7693
90.1379
78.6381
449001499443194849371
7.6511
ckim-vqsrSNPtimap_l250_m2_e0het
69.6152
53.9336
98.1544
97.0778
175514991755330
0.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2997
91.1929
99.7939
58.4384
154801495154953223
71.8750
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2997
91.1929
99.7939
58.4384
154801495154953223
71.8750
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.4493
100.0000
65641495000